Jatropha Genome Database

JcCA0308941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308941.10 + phase: 0 /TE/partial
         (1987 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28725.m000320 DNA helicase hus2, putative                             103   4e-21

>28725.m000320 DNA helicase hus2, putative
          Length = 3702

 Score =  103 bits (52), Expect = 4e-21
 Identities = 124/148 (83%)
 Strand = Plus / Plus

                                                                       
Query: 150 tgtgatgagaagctccctaaacttaattggtcccaacatgtcaatgcacatgataatttt 209
           ||||||||||| || || ||| |||||||||| || || | ||| ||||| |||||||||
Sbjct: 58  tgtgatgagaaacttccaaaaattaattggtctcagcacgacaaggcacacgataatttt 117

                                                                       
Query: 210 tcatctcagaagaagtttttgagttcaaatttccttttctcactagaaagccaaaaacgt 269
           |||| |||||| ||||||||||| ||||||||||||| |||| ||||||  ||||||| |
Sbjct: 118 tcatgtcagaaaaagtttttgagctcaaatttcctttactcattagaaaatcaaaaacct 177

                                       
Query: 270 catattgaaggttccatggctataaggt 297
           || |  ||||||  ||||||||| ||||
Sbjct: 178 cacagcgaaggtgtcatggctatgaggt 205



 Score = 91.7 bits (46), Expect = 2e-17
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1478 aggcttggcatactctttccagtcttcagatttcttgcaggagctacttacaacctggca 1537
            ||||||||||| |||||||| ||||||||||||| ||||||| |||| |||||||||| |
Sbjct: 257  aggcttggcatgctctttcctgtcttcagatttcctgcaggaactacctacaacctggga 316

                      
Query: 1538 aaactggtcc 1547
            ||||||||||
Sbjct: 317  aaactggtcc 326



 Score = 63.9 bits (32), Expect = 3e-09
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1811 atactaatcaaaatagggagtctgcagaagcttcagctgattttattgatgatgatgatc 1870
            |||||| ||| ||||  |||||||||||||||||  ||||||||||||||||||| || |
Sbjct: 614  atactagtcataataaagagtctgcagaagcttcgactgattttattgatgatgacgacc 673

                
Query: 1871 tact 1874
            ||||
Sbjct: 674  tact 677



 Score = 58.0 bits (29), Expect = 2e-07
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1614 tgtacatcaaaactttagtgaatcaagagtgaagaataatgaatctgtaaggtacatggg 1673
            ||||||||||||||||||||||||  | |  ||||||||| |||||| |||||| |||||
Sbjct: 417  tgtacatcaaaactttagtgaatccggtgcaaagaataataaatctgaaaggtatatggg 476

                 
Query: 1674 gaatt 1678
             ||||
Sbjct: 477  caatt 481