Jatropha Genome Database

JcCA0308681.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308681.20 + phase: 0 /partial
         (468 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006116 conserved hypothetical protein                          256   1e-67

>29908.m006116 conserved hypothetical protein
          Length = 675

 Score =  256 bits (129), Expect = 1e-67
 Identities = 321/385 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatttacagaatacaccaattttgacgaatgtcttgcttacatagaggatttcatgatt 60
           ||||||||||| || || || |||||||||||||||||||| || || ||||||||||||
Sbjct: 223 gaatttacagagtatacaaactttgacgaatgtcttgcttatattgaagatttcatgatt 282

                                                                       
Query: 61  aatcatggaccttttgatggtctcttgggtttctctcagggagcaatactatcggcgggg 120
           ||  ||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct: 283 aaaaatggaccgtttgatggtctcctgggtttctctcagggggcaatattatcggcgggg 342

                                                                       
Query: 121 cttgcggggctgcaagctaagggcgtggctttaaagaatgtacccaaaataaagttcctg 180
           ||  |||| || ||||| || || |||||| |||  || ||||| ||||||||||  |||
Sbjct: 343 ctgccgggactacaagccaatggtgtggctctaacaaaagtacctaaaataaagtatctg 402

                                                                       
Query: 181 ataataattggcggagctaagttcaagtcaccatccgtggccgaaaaagcatatgcctct 240
           |||||||| || ||||| ||||||| | ||||||| ||||| || || ||||||   || 
Sbjct: 403 ataataatcggaggagcaaagttcagggcaccatctgtggctgagaaggcatatctttca 462

                                                                       
Query: 241 ccaattcaatgtgcctctattcactttttaggagagacggactttttgaagccgcatggt 300
           |||||||||||  | ||  | |||||||| ||||||| |||||  |||| |||  |||| 
Sbjct: 463 ccaattcaatgcccgtcgctccactttttgggagagatggactacttgaggccatatgga 522

                                                                       
Query: 301 ttagagctcttggaatcgtttgtagaacctgttgtgattcaccatccaaagggccatacc 360
            | |||||||||||||| | |||||| ||||| ||||| || ||||||||||||||||||
Sbjct: 523 ctggagctcttggaatcctgtgtagaccctgtagtgatccatcatccaaagggccatacc 582

                                    
Query: 361 atacccagacttgatgaaacaagtc 385
           ||||| ||||||||||||| |||||
Sbjct: 583 ataccaagacttgatgaaaaaagtc 607