Jatropha Genome Database

JcCA0308681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308681.10 - phase: 0 /pseudo/partial
         (234 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006116 conserved hypothetical protein                           82   2e-15

>29908.m006116 conserved hypothetical protein
          Length = 675

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 107/129 (82%)
 Strand = Plus / Minus

                                                                       
Query: 28  gctggataaggtgcgtctggaaaaacaagatcgatcttttgaagaactgattcaggccac 87
           ||||| ||||| || ||| | ||||||||||| |  || |||||||  ||||||||||| 
Sbjct: 155 gctgggtaaggagcatctaggaaaacaagatccaagttctgaagaagcgattcaggccat 96

                                                                       
Query: 88  ttagagacctgtttcttaagaatttctccgcttgttctaaatccatgtaggcatagaaat 147
           |||   | ||||||||| |||||||| |||||||||||||||||||| || |||||||| 
Sbjct: 95  ttatgtatctgtttcttgagaatttcgccgcttgttctaaatccatggagacatagaaac 36

                    
Query: 148 ctcggtttc 156
           || ||||||
Sbjct: 35  ctgggtttc 27