Jatropha Genome Database

JcCA0308501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308501.20 + phase: 0 /pseudo/partial
         (679 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001731 conserved hypothetical protein                          192   2e-48

>29680.m001731 conserved hypothetical protein
          Length = 945

 Score =  192 bits (97), Expect = 2e-48
 Identities = 172/195 (88%), Gaps = 4/195 (2%)
 Strand = Plus / Plus

                                                                       
Query: 440 ttggcaagcgtttggtatctgctggaaggaggttccaatcaatgggacagtatggtcagg 499
           |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 503 ttggtaagcgtttggtatctgctggaaggagattccaatccatgggacagtatggtcagg 562

                                                                       
Query: 500 gcgaaatgcagaaggtagcacaagcaatgattagaactgggaaacttctgtctgcaaatc 559
           | |||||||||||||| |||||||  ||||||| |||||| |||||||| |||| || ||
Sbjct: 563 gtgaaatgcagaaggttgcacaagagatgattacaactggaaaacttctatctgaaattc 622

                                                                       
Query: 560 caataccaacaacaacagatgaagaaccaaagaaagaaacaagagtcttcaagttttgga 619
           |||||   ||||| |   |||||||||||||| ||||||| |||||||||||| ||||| 
Sbjct: 623 caatatttacaacca---atgaagaaccaaaggaagaaaccagagtcttcaag-tttggc 678

                          
Query: 620 gaacttcaggttgca 634
           |||||||||||||||
Sbjct: 679 gaacttcaggttgca 693



 Score =  180 bits (91), Expect = 7e-45
 Identities = 169/195 (86%)
 Strand = Plus / Plus

                                                                       
Query: 198 tcaatctcttctccagcagctcactgatagttttgatcttccatcggattattttaaaca 257
           |||||| ||||||  ||||||| ||||| |||||||||||||| | || ||||||||| |
Sbjct: 234 tcaatcccttctcttgcagctctctgattgttttgatcttccagcagactattttaaaga 293

                                                                       
Query: 258 attacctcgtgatcttcgacttgatttaaatgatgctgcttttgatctttcaaatggacc 317
           |||||| |||||||||||| | |||||||||||||| |||||||||||||| | ||||||
Sbjct: 294 attaccacgtgatcttcgattagatttaaatgatgcagcttttgatctttccagtggacc 353

                                                                       
Query: 318 agttattgatgagtgtggtcaagagctgggagagctcctgttaaacctctcccgagcatg 377
            ||||| ||||||||||| |||||||||||| || || |  |||| ||||| ||||||||
Sbjct: 354 cgttatcgatgagtgtggccaagagctgggaaaggtcttactaaatctctctcgagcatg 413

                          
Query: 378 ggaattggctgacac 392
           |||||| ||||||||
Sbjct: 414 ggaattagctgacac 428