Jatropha Genome Database

JcCA0307631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0307631.20 - phase: 0 
         (252 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30073.m002281 Transcription elongation factor, putative                58   3e-08
29726.m003928 Transcription elongation factor, putative                50   6e-06

>30073.m002281 Transcription elongation factor, putative
          Length = 252

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                      
Query: 1  atggcaagaagaaaaacgaagcgagttctgaagaagccagtgcgagtggagaagcttgag 60
          ||||||||||||| ||| ||||| | |   ||||||||| ||||||||||||| || |  
Sbjct: 1  atggcaagaagaagaacaaagcgtgctgctaagaagccaatgcgagtggagaaactcgca 60

                                       
Query: 61 acaaccttcacttgcccgttctgcaacca 89
          ||  ||||||||||||| |||||||||||
Sbjct: 61 actgccttcacttgcccattctgcaacca 89


>29726.m003928 Transcription elongation factor, putative
          Length = 189

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 67  ttcacttgcccgttctgcaaccaccgccactctgttgcatgcgtcattgataggaag 123
           ||||||||||| ||||||||||||  | ||  ||||||||||| |||||| ||||||
Sbjct: 67  ttcacttgccctttctgcaaccacgccaacagtgttgcatgcgacattgacaggaag 123