Jatropha Genome Database
- JcCA0307531.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0307531.10 + phase: 0 /partial
(1008 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29866.m000624 transcription initiation factor ia, putative 262 4e-69
>29866.m000624 transcription initiation factor ia, putative
Length = 1923
Score = 262 bits (132), Expect = 4e-69
Identities = 353/426 (82%), Gaps = 3/426 (0%)
Strand = Plus / Plus
Query: 586 aaatatcgaactgagatttatgtggagaacatgctaagattggaaagtggtgcaattaga 645
|||||||||||||| || ||||||||||| ||| |||||||||| ||||||||||| |||
Sbjct: 619 aaatatcgaactgaaatctatgtggagaatatgttaagattggagagtggtgcaataaga 678
Query: 646 gaatttgttgggaacaggatgattatggctgtggttgacatgctggtagagttggatgtg 705
||||||||||| | ||||||| | ||||| |||||||| | |||| |||| |||||||||
Sbjct: 679 gaatttgttggaagcaggatgctgatggcggtggttgataagctgatagatttggatgtg 738
Query: 706 gctattggttgggatgacatattacgagatgactctagtaaaggcatctttgcaattgag 765
|| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct: 739 gcaattggttgggatgacattctacgagatgactcctgtaaaggcatctttgctattgag 798
Query: 766 ctagaagaaggtgatattggttc---tgatgatgaagagaatgacattggcgagtttcca 822
|||||||| | |||| | ||| |||||||||| | ||||| ||||||| ||||
Sbjct: 799 ctagaagatgctgatgaggtttcagatgatgatgaatataatgattatggcgagcttccg 858
Query: 823 agaacttcaactcataagagtttaggcaaaaatgttgttgctgatttattggatggcttg 882
||||||| || |||||||| ||||| |||| || | ||||||| | || ||| | ||
Sbjct: 859 agaactttaagccataagagcttaggtgaaaacgtcgctgctgatctgttagatagtctg 918
Query: 883 atggtgcaaacatttgagcatcttgaattgtgtgcaaacaataagcgcttgagtgaggta 942
||||| | || |||||||||||| || ||||||||||||||||| || |||| ||| ||
Sbjct: 919 atggtccgaatatttgagcatctcgagttgtgtgcaaacaataaacgtttgaatgacgtg 978
Query: 943 tttgaaactcttctggattcattcatgattactatcctgaacacttacaagtccaagttt 1002
|||||||| ||| ||||||| |||||| | |||||| | ||||| || ||||| ||||||
Sbjct: 979 tttgaaacccttttggattcgttcatgctaactatcttaaacacatataagtcaaagttt 1038
Query: 1003 tctcag 1008
|||||
Sbjct: 1039 gctcag 1044
Score = 167 bits (84), Expect = 2e-40
Identities = 309/384 (80%)
Strand = Plus / Plus
Query: 54 tgattctgacttagtttatcatgtcagggatgctcttatttccgctaaaacgggagataa 113
||||||||||||||||||||||||||||||||| ||| ||| | | || |||||||
Sbjct: 72 tgattctgacttagtttatcatgtcagggatgcccttcattcagttcaatacggagatac 131
Query: 114 tgaaagttaccaccagcttgttggggtaatgcatcattcaaaacgtctatcatcggatga 173
| ||||| ||||||||||||| || ||||||||||| |||| || | | |||||
Sbjct: 132 caacagttatgaccagcttgttggtgtcatgcatcattcccaacggcttacccctgatga 191
Query: 174 ggtggcccttcttgtgacaagtctaaaggcactatctggggcagtttcttgcatagacaa 233
||||| |||||| |||| |||||||||||||| |||||||||||||||| |||||| |
Sbjct: 192 tgtggcgcttcttttgactagtctaaaggcactctctggggcagtttcttatatagacga 251
Query: 234 tatttatcatgaatctcttcttagttctatttttggaatgagcatgtggaattatggtcc 293
| ||||| ||||||| ||||| ||||| |||||||| ||||||||||| ||
Sbjct: 252 gtgccaccatgatcgtcttcttcaatctatatttgggatgagcatttggaattatggacc 311
Query: 294 agatgtgatggatgcgttgctcgaattggttatttccttggctgcttcaaatgtcaaata 353
||||||||||| || ||||| ||| | ||||| ||||||| |||||||||| |||||
Sbjct: 312 tgatgtgatggaagctttgcttgaactcattattgccttggcagcttcaaatggaaaata 371
Query: 354 tgttgatgcatgcttggaaatgcttgttggcaatttcgtgccacccatgtatttggtaga 413
| ||||| |||| ||| |||||||||| ||||||||||||||| |||||||| | ||
Sbjct: 372 tattgatccatgtttgaaaatgcttgtaaccaatttcgtgccaccaatgtatttaattga 431
Query: 414 tgtactaaagcaaccacgtggtca 437
| ||||||||| ||||| |||||
Sbjct: 432 tatactaaagctgccacgcggtca 455