Jatropha Genome Database

JcCA0306971.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0306971.10 - phase: 0 
         (309 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000499 conserved hypothetical protein                          139   1e-32
30204.m001744 conserved hypothetical protein                          100   9e-21

>29762.m000499 conserved hypothetical protein
          Length = 300

 Score =  139 bits (70), Expect = 1e-32
 Identities = 186/227 (81%)
 Strand = Plus / Plus

                                                                       
Query: 61  gctcacatcaacctcaaagtcaagggtcaggatggaaatgaagnnnnnnncaggatcaaa 120
           ||||||||||| ||||| |||||||| |||||||| |||||||       |||||| || 
Sbjct: 55  gctcacatcaatctcaaggtcaagggccaggatggcaatgaagtttttttcaggattaag 114

                                                                       
Query: 121 agaagcacacaactgaagaagctgatgaatgcctactgtgatagacaatctgttgagttt 180
           |||||||| |||||||||||||| |||||||| ||||||||| | || || || ||||| 
Sbjct: 115 agaagcactcaactgaagaagcttatgaatgcttactgtgatcgtcagtcggtggagttc 174

                                                                       
Query: 181 aactcaattgcctttttgtttgatggtcgccgtcttcgaggagagcagactcctgatgag 240
           || || ||||| ||| ||||||||||||| || ||||| || |||||||| || ||||||
Sbjct: 175 aattctattgcatttctgtttgatggtcgtcggcttcgtggggagcagacaccagatgag 234

                                                          
Query: 241 ctggaaatggaagacggcgatgagattgatgccatgttgcaccaaac 287
            | || |||||||| || |||||||| ||||| ||| | ||||||||
Sbjct: 235 ttagagatggaagatggggatgagatagatgctatgcttcaccaaac 281


>30204.m001744 conserved hypothetical protein
          Length = 327

 Score = 99.6 bits (50), Expect = 9e-21
 Identities = 190/239 (79%)
 Strand = Plus / Plus

                                                                       
Query: 52  gatcaatccgctcacatcaacctcaaagtcaagggtcaggatggaaatgaagnnnnnnnc 111
           |||||| | |||||||| || |||||||||||||| |||||||| || ||         |
Sbjct: 67  gatcaaactgctcacattaatctcaaagtcaagggacaggatggcaacgagatgttcttc 126

                                                                       
Query: 112 aggatcaaaagaagcacacaactgaagaagctgatgaatgcctactgtgatagacaatct 171
           |||||||| |||||||| || |||   ||||| || | ||| || ||||| |||||||| 
Sbjct: 127 aggatcaagagaagcacccagctgcgaaagctaataactgcatattgtgacagacaatca 186

                                                                       
Query: 172 gttgagtttaactcaattgcctttttgtttgatggtcgccgtcttcgaggagagcagact 231
           || || |||||||| ||||| ||||| ||||||||  |  | || || || |||||||||
Sbjct: 187 gtggaatttaactccattgcatttttatttgatgggagaagactgcgcggggagcagact 246

                                                                      
Query: 232 cctgatgagctggaaatggaagacggcgatgagattgatgccatgttgcaccaaactgg 290
           ||||||||||| || |||||||| || ||||| |||||||| ||| |||||||||||||
Sbjct: 247 cctgatgagctcgagatggaagatggagatgaaattgatgctatgctgcaccaaactgg 305