Jatropha Genome Database
- JcCA0306761.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0306761.10 - phase: 2 /TE/partial
(1124 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014167 5'->3' exoribonuclease, putative 1088 0.0
30128.m008637 5'->3' exoribonuclease, putative 86 5e-16
30073.m002213 5'->3' exoribonuclease, putative 78 1e-13
30055.m001624 5'->3' exoribonuclease, putative 66 5e-10
>30170.m014167 5'->3' exoribonuclease, putative
Length = 3342
Score = 1088 bits (549), Expect = 0.0
Identities = 923/1050 (87%)
Strand = Plus / Plus
Query: 38 gaggtattccagtgcatgtttgactacatcgatagactgtttgttatggtgagacctaga 97
|||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||| ||
Sbjct: 226 gaggtattccagtgcatgtttgactatattgatagactttttgtgatggtcagacctcga 285
Query: 98 aagttgctatacatggcaattgatggtgttgctcctcgtgctaaaatgaatcagcaacga 157
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||
Sbjct: 286 aagttgctatacatggcaattgacggcgttgctcctcgggctaaaatgaatcagcaaaga 345
Query: 158 tctaggcgttttagagcagctaaagatgcagcagatgcggcagctgaagaagagaggcta 217
|| |||||||||||||| ||||||||| || ||| ||||||||||||||||| |||||
Sbjct: 346 tccaggcgttttagagctgctaaagatagagaagaggcggcagctgaagaagaaaggctt 405
Query: 218 agacaagagtttgagagcgagggtagaaagctaccacctaaggaggaatcacaaactttt 277
||||| ||||||||||| ||||| |||||||| || || |||||| ||||||| |||
Sbjct: 406 agacaggagtttgagagggagggcagaaagctgcctcccaaggagtcatcacaagtcttt 465
Query: 278 gattccaatgttatcactcctggaactgagtttatggctgttctttcaattgctctgcag 337
||||||||| ||||||| ||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct: 466 gattccaatattatcacgcctggaactgaatttatggcggttctctcaattgcactgcag 525
Query: 338 tactacattcatcttaggctaaattatgatcctggatggnnnnnnntaaaggttatcctt 397
|| ||||||||||| || |||||| |||||||||||||| ||||||| ||||||
Sbjct: 526 tattacattcatctcagactaaataatgatcctggatggaaaaaagtaaaggtcatcctt 585
Query: 398 tctgatgcaaatgttcctggcgaaggggaacacaagattatgtcttatatccgtctccag 457
|||||||||||||||||||| ||||||||||||||| ||||||| || || ||||| |||
Sbjct: 586 tctgatgcaaatgttcctggtgaaggggaacacaaggttatgtcatacattcgtcttcag 645
Query: 458 agaaatcttcctggttacaatccaaatacacgccattgcctgtatggtctggacgcagat 517
||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct: 646 agaaatcttcctggttatgatccaaatacacgccattgcctgtatggtttggatgcggat 705
Query: 518 ctgattatgttagccttagctacccacgaggttcatttttcaattcttcgagaggttgtt 577
|||||||||| || || |||||||| || | || |||||||||||| ||||| ||||
Sbjct: 706 ttgattatgttggcattggctacccatgaaatccacttttcaattcttagagagattgtc 765
Query: 578 ttcacacctggacaacaggacaaatgcttcctgtgtggtcagatgggtcatttggctgca 637
||||| ||||| ||||| ||||||||||| | || ||||||||||||||||| || |||
Sbjct: 766 ttcacgcctggtcaacaagacaaatgctttttatgcggtcagatgggtcatttagcagca 825
Query: 638 ggctgtgaaggaaaggctaagaggaaggcaggggaatttgatgagaaaggtggagaggct 697
| |||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct: 826 gattgtgaaggaaaggctaagaggaaggctggagaatttgatgagaaaggtgatgaggga 885
Query: 698 gttgcagtaaaaaagccataccagtttctcaatatttggactcttagagagtatctggaa 757
| || || ||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gctgtagcaaagaaaccttaccagtttctcaatatttggactcttagagagtatctggaa 945
Query: 758 tttgaaatgagaattcctaaccctccatttgatatcgattttgaacgggttgtggatgat 817
| || ||||||||||| || || ||||| | || ||||||||| | |||||||||||
Sbjct: 946 ctggagatgagaattccaaatcccccattcaagattgattttgaatgcattgtggatgat 1005
Query: 818 tttatattcatgtgtttctttgttggcaatgattttttgccacatatgcccactttggag 877
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1006 tttattttcatgtgtttctttgttggcaatgattttttgccacatatgccgactttggag 1065
Query: 878 attcgcgagggtgcaatcaacttgctaattgcagtatacaagaaggagtttagtacaatg 937
|||||||||||||||||||||||||| | |||||||| |||||||| |||| |||||
Sbjct: 1066 attcgcgagggtgcaatcaacttgcttttagcagtatataagaaggaatttacggcaatg 1125
Query: 938 ggtgggtatctgacagatgcaagcaagccaaatttgagcaatgtcgagcattttattcaa 997
|| ||||||||||| |||| | ||||||||||||||||||| || |||||||||||||||
Sbjct: 1126 ggcgggtatctgactgatggatgcaagccaaatttgagcaaggtggagcattttattcaa 1185
Query: 998 gcagtgggatcctatgaagataaaatattccagaaaagagcacgcttgcaccagcggcag 1057
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1186 gcagtggggtcctatgaggataaaatattccagaaaagagcgcgcttgcaccagcggcag 1245
Query: 1058 tcagaaagaatcaagcgggaaaaggcacag 1087
|||||||| |||||||| ||||||||||||
Sbjct: 1246 tcagaaaggatcaagcgagaaaaggcacag 1275
>30128.m008637 5'->3' exoribonuclease, putative
Length = 2895
Score = 85.7 bits (43), Expect = 5e-16
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 110 atggcaattgatggtgttgctcctcgtgctaaaatgaatcagcaacgatctaggcgtttt 169
|||||||||||||| ||||| ||| | || ||||||||||||||||| ||| |||| |||
Sbjct: 301 atggcaattgatggagttgcacctagagcgaaaatgaatcagcaacgttctcggcgattt 360
Query: 170 agagcagctaaagatgcagcagatgcggcagctgaagaagagaggctaagacaagagttt 229
||||| ||||||||||| || || || | |||||| ||||| || || ||| |||| |||
Sbjct: 361 agagctgctaaagatgctgctgaagcagaagctgaggaagaaagacttagaaaagaattt 420
Query: 230 gag 232
|||
Sbjct: 421 gag 423
Score = 73.8 bits (37), Expect = 2e-12
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 771 ttcctaaccctccatttgatatcgattttgaacgggttgtggatgattttatattcatgt 830
|||| ||||||||||| || ||| | |||||||| | ||||||||||| ||||| | |
Sbjct: 959 ttccaaaccctccattggagatcaactttgaacgaatactggatgattttgtattcttat 1018
Query: 831 gtttctttgttggcaatgattttttgccacatatgcccactttggagattcgcgagggtg 890
|||| |||||||||||||| || | ||||||||||| || ||||||||| | |||||||
Sbjct: 1019 gtttttttgttggcaatgacttccttccacatatgccaacattggagattagggagggtg 1078
Query: 891 c 891
|
Sbjct: 1079 c 1079
>30073.m002213 5'->3' exoribonuclease, putative
Length = 4638
Score = 77.8 bits (39), Expect = 1e-13
Identities = 117/143 (81%)
Strand = Plus / Plus
Query: 384 taaaggttatcctttctgatgcaaatgttcctggcgaaggggaacacaagattatgtctt 443
||||||| || || |||||| ||||||| ||||| |||||||| |||||||| |||||||
Sbjct: 563 taaaggtcattctctctgattcaaatgtacctggtgaaggggagcacaagataatgtctt 622
Query: 444 atatccgtctccagagaaatcttcctggttacaatccaaatacacgccattgcctgtatg 503
|||| ||| | || ||| |||| || || || |||| || ||||| |||||| ||||||
Sbjct: 623 atattcgtttgcaaagagatctgccaggatatgatcctaacacacgacattgcttgtatg 682
Query: 504 gtctggacgcagatctgattatg 526
| |||| |||||||| ||||||
Sbjct: 683 gattggatgcagatctaattatg 705
Score = 73.8 bits (37), Expect = 2e-12
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 116 attgatggtgttgctcctcgtgctaaaatgaatcagcaacgatctaggcgttttagagca 175
||||||||||||||||| || ||||| |||||||| ||| | |||||||||||||| ||
Sbjct: 304 attgatggtgttgctccgcgagctaagatgaatcaacaaaggtctaggcgttttagggcc 363
Query: 176 gctaaagatgcag 188
|||||||| ||||
Sbjct: 364 gctaaagaggcag 376
Score = 60.0 bits (30), Expect = 3e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 812 gatgattttatattcatgtgtttctttgttggcaatgattttttgccaca 861
||||||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 982 gatgattttatcttcatgtgtttgtttgttggaaatgatttcctgccaca 1031
Score = 58.0 bits (29), Expect = 1e-07
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 278 gattccaatgttatcactcctggaactgagtttatgg 314
||||| ||||| |||||||||||||||||||||||||
Sbjct: 457 gattctaatgtaatcactcctggaactgagtttatgg 493
>30055.m001624 5'->3' exoribonuclease, putative
Length = 2982
Score = 65.9 bits (33), Expect = 5e-10
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 386 aaggttatcctttctgatgcaaatgttcctggcgaaggggaacacaagattatgtcttat 445
||||| || ||||| ||||| | |||||||||||| |||||||| ||||| ||||||| |
Sbjct: 517 aaggtaattctttcagatgccagtgttcctggcgagggggaacataagataatgtctttt 576
Query: 446 atccgtctccagagaaatcttcctggttacaatccaaatacacgccattgcctgtatggt 505
|| || | ||| | | || |||| ||| ||||| || |||||||||||||| ||||||
Sbjct: 577 atacgccagcagcgcatgctgcctgattataatcctaacacacgccattgcctctatggt 636
Query: 506 ctgga 510
|||||
Sbjct: 637 ctgga 641
Score = 56.0 bits (28), Expect = 5e-07
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 86 gtgagacctagaaagttgctatacatggcaattgatggtgttgctcctcgtgctaaaatg 145
|||||||| || || || |||||| | || |||||||| || ||||| ||||| ||||||
Sbjct: 217 gtgagaccaaggaatttactatacctagctattgatggagtagctccacgtgcaaaaatg 276
Query: 146 aatcagcaacgatctaggcgtttt 169
||||||||| |||| || ||||||
Sbjct: 277 aatcagcaaagatcaagacgtttt 300