Jatropha Genome Database

JcCA0306451.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0306451.20 - phase: 0 
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003276 DNA-directed RNA polymerase II, putative                194   2e-49

>29889.m003276 DNA-directed RNA polymerase II, putative
          Length = 801

 Score =  194 bits (98), Expect = 2e-49
 Identities = 152/170 (89%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggtattgcaggatgtagctgcagatccaacgcttcctcgcactaaagctgtatcatgc 231
           |||||||| |||||||| || || |||||||| ||||||||||||||||||||    |||
Sbjct: 625 caggtattacaggatgtggccgctgatccaacacttcctcgcactaaagctgttgagtgc 684

                                                                       
Query: 232 caggtttgcaaacatcaagaagctgtcttcttccaggcaactgccaggggagaggagggt 291
           || |||||||| ||||  |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 caagtttgcaagcatcctgaagctgtcttcttccaggcaactgcaaggggagaggagggt 744

                                                             
Query: 292 atgacactgttcttcgtctgctgcaatccaaattgtgggcatcggtggag 341
           |||||||||||||| ||||||||||| |||| |||||||||||| |||||
Sbjct: 745 atgacactgttctttgtctgctgcaacccaatttgtgggcatcgttggag 794



 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 283 gaggagggtatgacactgttcttcgtctgctgcaatccaaattgtgg 329
           |||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 266 gaggagggtatgacactgttttacgtttgctgcaatccaaattgtgg 312