Jatropha Genome Database
- JcCA0306451.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0306451.10 + phase: 0 /pseudo/partial
(3546 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29889.m003277 WD-repeat protein, putative 1035 0.0
30076.m004662 WD-repeat protein, putative 143 8e-33
>29889.m003277 WD-repeat protein, putative
Length = 4560
Score = 1035 bits (522), Expect = 0.0
Identities = 1035/1210 (85%), Gaps = 17/1210 (1%)
Strand = Plus / Plus
Query: 44 gattgtagaatttgtgtttggaatgctgctgatggtagcatagtacattctttgaccggc 103
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1708 gattgcagaatttgtgtttggaatgctgctgatggtggcatagtacattctttgactggt 1767
Query: 104 cacactaattctacatatgttctggacgttcatcctttcaacccacggattgctatgagt 163
|| ||| |||| || ||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 1768 catactgattccacgtatgttctggatgttcatcctttcaatccacgaattgctatgagc 1827
Query: 164 gctggctatgatggaagaacaatagtgtgggatatatgggagggcacacccatccggatc 223
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1828 gctggttatgatggaagaactatagtgtgggatatatgggagggcacacccatccggatc 1887
Query: 224 tacgagatttcccgtttcaagttagttgatggcaagttttcacccctgctttttgtgata 283
|| || ||||| ||||||||| |||||||||| |||||||||||
Sbjct: 1888 tatgaaatttcgcgtttcaagctagttgatgggaagttttcacc---------------- 1931
Query: 284 gggatgggacatccattatactttcagatgatgttggtcaattatatatattgaacacag 343
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1932 -ggatggcacatctattatactttcagatgatgttggtcaattatatatattaaacacag 1990
Query: 344 gccaaggtgaatcccaacaagatgctaaatatgaccagttcttccttggtgattatcggc 403
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1991 gccaaggtgaatcccaacaggatgctaaatatgaccagttcttccttggtgattaccggc 2050
Query: 404 cccttatgcaagacacctacggaaacataattgaccaagaaactcagcttgtaccatacc 463
|| | || ||||||||||| || ||| || ||||||| |||||||||||||| |||||||
Sbjct: 2051 ccgtgatacaagacacctatgggaacgtacttgaccaggaaactcagcttgtgccatacc 2110
Query: 464 gacgaaatatgcaagatcttctttgtgactcgggaatgaatccctatccagagccttatc 523
||||||||||||||||||| || |||||||| ||||||||||| |||||||| |||||||
Sbjct: 2111 gacgaaatatgcaagatctcctatgtgactcaggaatgaatccttatccagaaccttatc 2170
Query: 524 agagtatgtaccaaaagagacgcttaggagctctgaatatggagtggaagccaccttcta 583
||||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 2171 agagtatgtaccagaagagacggttaggagctttgaatatggactggaagccaccttcta 2230
Query: 584 taaaactcactgtggtgcctgacttcagcttagacccagatttccaaatgttgccgttgg 643
||||||| |||| | |||||| ||||| ||||||||||| | ||||||| |||| ||||
Sbjct: 2231 taaaacttgctgttgggcctgatttcagtttagacccagaataccaaatgctgcccttgg 2290
Query: 644 cagacttggatgttctggttgagccactgcctgagtttgtagatgcaatggattgggagc 703
||||||||||||| ||||||| || |||||||||||||||||| ||||||||||| |
Sbjct: 2291 cagacttggatgtattggttgaacctttgcctgagtttgtagatgtcatggattgggaac 2350
Query: 704 cagaaaatgaagtgcaaagcgaagattcagattcagagtacaatgtccctgaagagtatt 763
||||||||||||| ||||| || ||| |||||||||||||||||| ||||||| || |
Sbjct: 2351 cagaaaatgaagttcaaagtgatgataatgattcagagtacaatgtcactgaagaatact 2410
Query: 764 ctactggaggtgagcaagggagtttgaattctagctcctctgttgatcgggagtgcagtg 823
||| ||| ||||||||||| ||||| |||||||| || || || |||| || ||||||
Sbjct: 2411 ctagtgggggtgagcaaggaagtttaaattctagttcgtcagtcgatccagattgcagtt 2470
Query: 824 cagaagacagtgaagttgagggcaggaatggttttcatagatctaaaaggaaaaaatcaa 883
| |||| ||||| | || |||| | | | |||||||| |||| ||||||||| |
Sbjct: 2471 ctgaaggtagtgagatcgaaggcaaggacagctttcataggtctactaggaaaaaacaga 2530
Query: 884 aggctgaaattgagataatgacttcttcaggaaggcgtgttaagaggaggaatttggacg 943
| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 2531 aagctgaaattgagataatgacgtcttcagggaggcgtgttaaaaggaggaatttggacg 2590
Query: 944 aatgtgatggcaatacattgagaactaaccgaactaggaaatcaaggattggctgtaaag 1003
| |||| ||| ||||| || |||| | ||||||| |||||||||| |||||| | |||
Sbjct: 2591 agtgtgttggtaataccttcagaagtcaccgaacaaggaaatcaaagattggtcgaaaaa 2650
Query: 1004 cttcaaaaaggaagtcttctacatcaaagggttttagacctcaaagagctgctgcccgca 1063
||||||| |||||||| | | ||||| ||| |||||||||||||| ||||||||||
Sbjct: 2651 cttcaaaggcaaagtcttccatgttaaaggctttgagacctcaaagagcagctgcccgca 2710
Query: 1064 atgctcttacattgttttcaaaaataacaggagcagctacagatggagaagatgaagata 1123
||||||||| |||||||||||||| || ||| ||||| ||| ||||||||||| ||||
Sbjct: 2711 atgctcttagtttgttttcaaaaatcactggaacagcttcaggtggagaagatggggata 2770
Query: 1124 gctcagaggccgattcatcagaaagtgaatcctcactgcaaaattcagatatccagagtg 1183
||||||| ||||||||||||||||||||| | ||| | ||||| |||||||| |
Sbjct: 2771 gctcagaaattgattcatcagaaagtgaatccatgcagcagcaatcagacatccagagcg 2830
Query: 1184 atgaatcagagaaatctttgcaaaatgaacggaacaagcatttgaaagggaaagaagttc 1243
|||||||||||| ||| |||||||||| || |||| | || |||||||||||||||||
Sbjct: 2831 atgaatcagagagatccttgcaaaatgcacaaaacaggaatatgaaagggaaagaagttt 2890
Query: 1244 cattggaaga 1253
||||||||||
Sbjct: 2891 cattggaaga 2900
Score = 515 bits (260), Expect = e-145
Identities = 667/806 (82%), Gaps = 18/806 (2%)
Strand = Plus / Plus
Query: 2491 agcagatgtcaacttcctagtgaagaatggggatcaagctcaaggatgacagttggatta 2550
||||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||
Sbjct: 3589 agcagatgtcaactttctggtaaagaatggagatcaagctcaaggatgacagttggaata 3648
Query: 2551 agatcatctagaaataggagaactagttaccatttccgtgatgcaagtccagtagataga 2610
||||| |||||| ||||||| | ||||| ||||| |||||||||||||||||| ||||
Sbjct: 3649 agatctactagaagtaggagacccagttatcattttcgtgatgcaagtccagtaaatagg 3708
Query: 2611 agaaaggcaaatcaatcaggnnnnnnngtgtcgtggctaatgttgtcgaagcatgaggag 2670
|| || || ||||| ||| || ||| |||||||||| | ||| ||||||
Sbjct: 3709 aggaaatcacatcaaccagccaaaaga---tcatggttaatgttgtccatgcacgaggag 3765
Query: 2671 ggttctcgttatattccccagcagggggatgaagtagtatattttagacaggggcatcag 2730
|| ||||||||||| || |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 3766 ggctctcgttatatccctcagctaggggatgaagtagtatatttaagacaggggcatcag 3825
Query: 2731 gagtacataga------------ctacattggatcaagggaaacaggcccttggaagtct 2778
||||||| ||| | | | || |||| ||| | || |||||||||||
Sbjct: 3826 gagtacaaagaggtatgcaaagaccaaaatgtctcaaaagaacctgggccttggaagtca 3885
Query: 2779 gttaagggacatataagggcagtggaattctgtaaacttgaagccctcgagtattccaca 2838
|| ||||| ||||||||||||||||||||||| ||| |||||| || ||||||||||||
Sbjct: 3886 gtaaagggtcatataagggcagtggaattctgcaaagttgaaggactggagtattccaca 3945
Query: 2839 ttaccaggatctggagatagttgctgcaaaatgactcttaaatttgtagattctacttct 2898
||||| |||||||| |||||||||||||||| || | |||||||||| ||||||||
Sbjct: 3946 acaccag---ctggagatggttgctgcaaaatgacactcatatttgtagatcctacttct 4002
Query: 2899 gacgtatgccaaaaatcatttaaattaactctacctgaagtgacagggttcccagatttt 2958
||||| | | | ||| |||| ||||||| |||||||||||| ||||| ||||||||||||
Sbjct: 4003 gacgtgttcgagaaaacattcaaattaagtctacctgaagttacaggtttcccagatttt 4062
Query: 2959 ctcgttgagagaactcggtttgatgctgctatgcgaagaaattggacatgcagggataaa 3018
|| ||||| |||||||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4063 cttgttgaaagaactcgctttgatgctgctatgcagagaaattggacaagcagggataaa 4122
Query: 3019 tgtagagtctattggaaaaatgacggtgaaggagatggtagttggtgggaaggccggatt 3078
|||| ||||| ||||||||||| ||||||| |||||| || |||||||| ||||| ||
Sbjct: 4123 tgtaaagtctggtggaaaaatgagggtgaagaagatggcagctggtgggattgccgggtt 4182
Query: 3079 ctttctgtaaaggctaaaacttctgaatttccagacagtccatgggaaaggtatactatt 3138
| ||||||||| | ||| |||| || |||||||||||||||||||| |||| ||| ||
Sbjct: 4183 gtgtctgtaaagcccaaatcttccgagtttccagacagtccatgggagaggtgcactgtt 4242
Query: 3139 cagtacaggagtgaccccagagaaacacaccaacacagtccttgggagctttttgatttt 3198
|||||| |||||| ||| |||| ||| || |||||||||||||||||||||||| |
Sbjct: 4243 aagtacaagagtgatccctcagaagaacatcaccacagtccttgggagctttttgatgat 4302
Query: 3199 gattcccaatgggagcagcctcatattgatgatgagatcagaaacaagctaatatctgcc 3258
||| | |||||||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 4303 gatactcaatgggagcagcctcatattgatgatgagattaggaacaagctgatgtctgcc 4362
Query: 3259 tttgccaaactggagcagtcaggcaa 3284
|| |||||| | ||||| ||||||||
Sbjct: 4363 ttagccaaattagagcaatcaggcaa 4388
Score = 95.6 bits (48), Expect = 2e-18
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 2208 tccaaaaaagatgttcaatgttgtttaccgaagatcaaagttgagtaaagatagagctaa 2267
||||||||| |||| ||||||||||| |||| |||||||| |||| ||||||||||||
Sbjct: 3312 tccaaaaaatatgtataatgttgtttatagaaggtcaaagttaagtagagatagagctaa 3371
Query: 2268 ctcagaaggtgatagtggca 2287
||||||||||||||||||||
Sbjct: 3372 ctcagaaggtgatagtggca 3391
Score = 58.0 bits (29), Expect = 4e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 3385 cagtcaaggttggagaactactactatcgaactttggaggc 3425
||||||||||||||||| |||||||||||||||| |||||
Sbjct: 4396 cagtcaaggttggagaataactactatcgaacttttgaggc 4436
>30076.m004662 WD-repeat protein, putative
Length = 4641
Score = 143 bits (72), Expect = 8e-33
Identities = 141/164 (85%)
Strand = Plus / Plus
Query: 44 gattgtagaatttgtgtttggaatgctgctgatggtagcatagtacattctttgaccggc 103
||||| ||||| ||||| ||||| ||| ||||||||| |||||||||||||||| ||
Sbjct: 1657 gattgcagaatatgtgtctggaacgcttctgatggtaatttagtacattctttgactggt 1716
Query: 104 cacactaattctacatatgttctggacgttcatcctttcaacccacggattgctatgagt 163
|||||| ||| | |||||| | || |||||||||||| |||| ||||| |||||||||
Sbjct: 1717 cacactgcatcttcttatgttttagatgttcatcctttcgaccctcggatagctatgagt 1776
Query: 164 gctggctatgatggaagaacaatagtgtgggatatatgggaggg 207
||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 1777 gctggatatgatggaagaacaatagtatgggatatatgggaggg 1820
Score = 87.7 bits (44), Expect = 4e-16
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 335 tgaacacaggccaaggtgaatcccaacaagatgctaaatatgaccagttcttccttggtg 394
||||||||||||| ||||||| ||| | ||||| |||||||| |||||||||||||| |
Sbjct: 1937 tgaacacaggccagggtgaatgtcaaaaggatgccaaatatgatcagttcttccttgggg 1996
Query: 395 attatcggccccttat 410
||||||||||||||||
Sbjct: 1997 attatcggccccttat 2012