Jatropha Genome Database

JcCA0304141.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0304141.20 - phase: 0 
         (1053 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003435 conserved hypothetical protein                          109   3e-23

>29794.m003435 conserved hypothetical protein
          Length = 1122

 Score =  109 bits (55), Expect = 3e-23
 Identities = 148/179 (82%)
 Strand = Plus / Plus

                                                                       
Query: 466 aaacttgctgctctccacctcttagaacgctcgttagttcctaacccgccttccgacccg 525
           ||||||||| ||||||| ||||||||||| || |||||||||||||| || ||  || | 
Sbjct: 442 aaacttgcttctctccatctcttagaacgttctttagttcctaaccccccatcacactcc 501

                                                                       
Query: 526 gtttgcccactagaacttatgcgcggggtggtggtaaatttgaaaaacaaggcaggggca 585
           || |||||||   |||| ||||||| | |||| | ||||||||||||||| |||||||| 
Sbjct: 502 gtctgcccaccccaactcatgcgcgcgctggttgcaaatttgaaaaacaaagcaggggcg 561

                                                                      
Query: 586 aaagcggcaacgaaaattttgctggcactttgtttggctgaggggaatcgccacgtggc 644
           ||| ||||||| ||||||||  | || ||||| || |||||||  ||||||||||||||
Sbjct: 562 aaaccggcaaccaaaattttattagctctttgcttagctgaggccaatcgccacgtggc 620



 Score = 87.7 bits (44), Expect = 1e-16
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                        
Query: 889  caggtgcatcaggcgccgccagaggaggtggcgcgtgcggtgatattggctttacaaggg 948
            |||||||| || |||||||| || |||||||||||||| ||  ||||||| |||||||| 
Sbjct: 898  caggtgcagcacgcgccgcctgaagaggtggcgcgtgcagtagtattggcgttacaaggc 957

                                                                    
Query: 949  gattgtacagcaagagcgaggaggaaaggagctcagctgttgaaggctcttcaaga 1004
            |||||||| || |||| ||||||||||||   |||| |||| ||||||||| ||||
Sbjct: 958  gattgtactgctagagggaggaggaaagggcatcagttgttaaaggctcttgaaga 1013



 Score = 81.8 bits (41), Expect = 8e-15
 Identities = 76/87 (87%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                       
Query: 236 ctgaatcctcctcctcttcttcctcctct---acttctcaaagcttcactcagtggagat 292
           |||||||||||||||| || |||||||||   ||||| ||||||||||| || |||| ||
Sbjct: 230 ctgaatcctcctcctcctcctcctcctctaccacttcccaaagcttcacccaatggaaat 289

                                      
Query: 293 tccctctcgtgaactctcctctccacc 319
           |||||||||| | ||||||||||||||
Sbjct: 290 tccctctcgtaacctctcctctccacc 316



 Score = 65.9 bits (33), Expect = 5e-10
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                      
Query: 37 cgtccattcttctcttgtggcttctttcgccactgtacccaaactgccctcagtcctacc 96
          ||||| ||||| ||||||||||||||||||||||| || |||||| | |||||||| |||
Sbjct: 37 cgtcccttcttttcttgtggcttctttcgccactgcactcaaactacactcagtcccacc 96

           
Query: 97 a 97
          |
Sbjct: 97 a 97