Jatropha Genome Database
- JcCA0304111.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0304111.10 - phase: 0
(972 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30128.m008799 cyclin h, putative 733 0.0
>30128.m008799 cyclin h, putative
Length = 939
Score = 733 bits (370), Expect = 0.0
Identities = 603/680 (88%), Gaps = 3/680 (0%)
Strand = Plus / Plus
Query: 280 gcactcatatactttaaaaggttttatcttcaatggtcggtcatggagcatgatccaaaa 339
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 253 gcactcatatactttaaaagattttaccttcaatggtcggtcatggagcatgatccaaaa 312
Query: 340 aatataatgttaacctgtatatattcagcttgcaagatagaggaaaatcatgtgtcggca 399
| ||||||||||||||||||||| |||| || ||||| || ||||||||||| || |||
Sbjct: 313 cacataatgttaacctgtatatatgcagcatgtaagattgaagaaaatcatgtatctgca 372
Query: 400 gaggagcttggtaaggggatttcacaggatcatcatatgattctcaattatgagatgata 459
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 373 gaggagcttggtaaggggatttctcaggatcatcaaatgattctcaattacgagatgatt 432
Query: 460 attcttcagagcttggaatttgatcttattgtctatgcaccataccgttcagttgagggt 519
|||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 433 gttcttcagagtttggactttgatcttattgtatatgctccataccgttcagttgaaggt 492
Query: 520 tttatcaatgacatggaggaattctgccatgcgacagatgaccaaattcaaatgctgaag 579
||||||||||| |||||||| ||||||||||| || ||||| || | ||||||| |||||
Sbjct: 493 tttatcaatgatatggaggacttctgccatgcaacggatgatcagactcaaatgttgaag 552
Query: 580 gagttgcaatcaagtgcagtagcagaggttgacaaaatcatgtttactgatgcaccactg 639
|| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 553 gatttgcaagtaagtgcagtagcagaagttgacaaaatcatgtttactgatgcaccattg 612
Query: 640 cttttccctcctgggcagttagcattggctgctttgcgaagtgcaaatgagatgcaccag 699
||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
Sbjct: 613 ctttttcctccggggcagttagcattggctgctttacgaagtgcaaatgggatgcatcgt 672
Query: 700 gttctagattttgaaagataccttggggacatcctcgctcgtcagaattctatacacacg 759
|| || ||||||||||||||||| ||||||| ||| |||||||||||| | || ||
Sbjct: 673 gtgcttgattttgaaagatacctaagggacattctctctcgtcagaatttggtgcataca 732
Query: 760 atgtcagatcttttcgaatctctggacgccataaattcttgggtaaagaagtacaagttc 819
|| ||| |||| |||||||| || || ||| |||||||||||||||||||||| |||
Sbjct: 733 atttcaaatctcactgaatctctagatgcaatagattcttgggtaaagaagtacaaattc 792
Query: 820 cctacagaaaaggatatgaaacacataaatcggaagctgaaatcttgttggggccacagc 879
|||||||||||||||||||| ||||| ||| |||||||||| ||||||||||| || |||
Sbjct: 793 cctacagaaaaggatatgaagcacattaataggaagctgaagtcttgttggggtcatagc 852
Query: 880 tcgcatgacgaaagtaagaaacgggagaagaaatcaaaacacaagtcccataagggttca 939
||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 853 tcgcacgacgaa---aagaatcgggagaagaaatcaaaacacaagtcccataagagttca 909
Query: 940 aatgaaatgcaaaacggccc 959
|||||||||||||| |||||
Sbjct: 910 aatgaaatgcaaaatggccc 929
Score = 248 bits (125), Expect = 5e-65
Identities = 215/245 (87%)
Strand = Plus / Plus
Query: 1 atggccgattttcagacttcgacccacagagccaagtggatcttcactcctcaacagtta 60
|||||||||||||| || ||||| ||||||| ||||||||||||||||||||||||| |
Sbjct: 1 atggccgattttcaaacctcgactcacagagtcaagtggatcttcactcctcaacagctg 60
Query: 61 gttgagaagcacaaagctactaatcaaagagccaaacaaatgctagagaagtatggaaca 120
|| ||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||
Sbjct: 61 gtagagaagcacaaagctactaatcaaagagccaaacaaatgttggagaaatatggcaca 120
Query: 121 acaagaatggaagtagacgttgatgggtcactgtcataccctgaacctcaagttaataca 180
||||||||||| ||||| |||||||||||| | ||||| |||||||||||||| || ||
Sbjct: 121 acaagaatggaggtagatgttgatgggtcaatatcatatcctgaacctcaagtgaacact 180
Query: 181 gcagagaatgcctataagcattctcgtccaaaaccgcttagtgttgaagaagaacaattt 240
| ||| ||||| |||| |||||||||||||| | | |||||||| ||||||||||||
Sbjct: 181 ggagacaatgctgataaacattctcgtccaaagtcattgagtgttgacgaagaacaattt 240
Query: 241 atgcg 245
|||||
Sbjct: 241 atgcg 245