Jatropha Genome Database

JcCA0302361.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0302361.20 + phase: 0 
         (699 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008755 conserved hypothetical protein                          109   2e-23

>30128.m008755 conserved hypothetical protein
          Length = 711

 Score =  109 bits (55), Expect = 2e-23
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 181 tgtgcaagtaagaaaagaaggggatcagggtctcaaaaattaagcaaaattgtaccaaaa 240
           ||||| || ||||||||||||||||| |||| |||||||||||  |||||| |||| |||
Sbjct: 193 tgtgccagaaagaaaagaaggggatctgggtttcaaaaattaaagaaaattttacccaaa 252

                                                          
Query: 241 ttagtatacattgcagcatcaaatctcaagatcttaccagaaccatt 287
           |||| || ||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 253 ttagcatccatagcagcatcaaacctcaagatcttaccagagccatt 299



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 111/138 (80%)
 Strand = Plus / Plus

                                                                       
Query: 542 taaaaaattgggttttagggatttgccttgttggtgctctgatgggtttgaggttaagga 601
           ||||| ||| |||||| | | ||||| ||||||||||| | |||||||||||||| | ||
Sbjct: 551 taaaatatttggttttggagctttgctttgttggtgctttaatgggtttgaggttgaaga 610

                                                                       
Query: 602 gaaaagaaatgcaacaatggcttcacaggcttagtgtttgcttgccagctttggagcttg 661
           || | || |||||||||||| |||| | | |||| | ||||   ||||||||  ||||||
Sbjct: 611 gacaggatatgcaacaatgggttcaaaaggttagggattgcactccagcttttcagcttg 670

                             
Query: 662 tgaagggaaagggaagaa 679
            || ||||||| ||||||
Sbjct: 671 cgaggggaaagagaagaa 688