Jatropha Genome Database
- JcCA0302331.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0302331.10 + phase: 2 /partial
(1069 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29675.m000392 glutamine synthetase plant, putative 250 1e-65
56871.m000011 glutamine synthetase plant, putative 113 2e-24
29726.m003921 glutamine synthetase plant, putative 96 5e-19
>29675.m000392 glutamine synthetase plant, putative
Length = 1071
Score = 250 bits (126), Expect = 1e-65
Identities = 821/1050 (78%), Gaps = 2/1050 (0%)
Strand = Plus / Plus
Query: 17 gatctcatcaaccttaatctctctgagaccactgacaagatcatcgcggagtacatatgg 76
||||| |||||| | ||||||||||| |||| ||||||||||| || || |||||||||
Sbjct: 16 gatctgatcaacatcaatctctctgattccacagacaagatcatagccgaatacatatgg 75
Query: 77 atcggtggatctggcatggacttgaggagcaaagcaaggaccctctctggaccagtcagt 136
|| ||||||||||| ||||||||||||||||| ||||||| || | |||||||| |||
Sbjct: 76 attggtggatctggtctggacttgaggagcaaatcaaggactctgccaggaccagtgagt 135
Query: 137 gatccttcaaagcttccaaagtggaactacgatggttccagcacaggccaggctcctgga 196
||||| ||||||||||| || |||||||| |||||||| ||||||| ||| || ||||
Sbjct: 136 gatccatcaaagcttcccaaatggaactatgatggttctagcacagaccaagccactggt 195
Query: 197 gaagatagtgaagtgatcctctatcctcaagctatttttagggatccatttagaaggggc 256
|| | |||||||| || | || || |||||||| |||| ||||| || ||||| ||
Sbjct: 196 gataacagtgaagtcatattgtacccgcaagctatctttaaagatcccttcagaagagga 255
Query: 257 aacaacatccttgtcatttgtgatgcttacaccccagccggtgagccaattccaacaaac 316
||||||||||| || || || ||| | ||||| ||||| || || || |||| || |||
Sbjct: 256 aacaacatcctggtgatgtgcgattcgtacacaccagcaggcgaccctcttcctaccaac 315
Query: 317 aagagacatgccgccgctaagattttcagccatcctgatgtggttgctgaagtgccttgg 376
|| || || || || || || ||||| |||||| | | ||||| | ||| |||
Sbjct: 316 aaaaggttcaatgctgccaaaatctttagccaccctgatattgccgctgaggagccatgg 375
Query: 377 tatggcattgagcaagaatacac-cttgttgcagaaagacattaaatggcctattggctg 435
||||| ||||||||||| || || ||| || ||||| || | || |||||||| || ||
Sbjct: 376 tatgggattgagcaagagtatactcttctt-cagaaggatgtgaagtggcctatcggatg 434
Query: 436 gcccattgggggcttccctggccctcagggaccatactattgtggtgttggtgctgacaa 495
||| |||| ||||| || |||||||||| || ||||| ||||| || || ||||||||
Sbjct: 435 gccagttggtggctttccaagccctcagggtccctactactgtggagtaggagctgacaa 494
Query: 496 gtcatttggaagagacattgttgatgcacattacaaggcttgtttatatgctggtgtcaa 555
| ||||| | | || || || | || | |||||| || |||| |||||| |||
Sbjct: 495 agcctttggccggaatatagtagactcccacttcaaggcatgcttatttgctggcatcag 554
Query: 556 cattagtggtattaatggagaagttatgcctggccagtgggagtttcaagttggacctgc 615
|| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 555 tatcagtggcatcaatggtgaagttatgcctggccagtgggaatttcaagttggccctgc 614
Query: 616 agttggtatctcagccggagatgaattgtgggttgctcgctacattttggagaggattac 675
|| ||||| |||||| | |||||||| ||| | ||||| |||||| | ||| | || ||
Sbjct: 615 tgtcggtatttcagccagtgatgaattatggatggctcgttacattcttgagcgaatcac 674
Query: 676 agagattgctggagttgtgctttcttttgatcctaagccaattcagggtgactggaatgg 735
|| ||||| || || | ||| ||||||| || || |||||||||||||||||||||||
Sbjct: 675 tgaaattgcaggggtcatccttacttttgacccaaaaccaattcagggtgactggaatgg 734
Query: 736 agcaggtgcacatacaaattacagtacaaagtcaatgagaaatgatggaggctatgaggt 795
||| |||||||| || || | |||||| ||||| ||||||| |||||| || ||| ||
Sbjct: 735 agccggtgcacacaccaacttcagtaccaagtccatgagaagtgatggtggaattgatgt 794
Query: 796 catcaagaaagcaattgaaaagctggggttgaggcacaaaaaacacattgctgcatatgg 855
|||||||| || ||||| || ||||| | ||||| | || || ||||| |||||
Sbjct: 795 tatcaagaaggctattgagaaactgggtcaacgtcacaaggagcatatagctgcctatgg 854
Query: 856 tgaaggcaatgagcgccgactcacggggcgacatgaaacagctgacatcaacactttcaa 915
||||||||||| | || | || || |||||||| || ||||| ||||||||||||
Sbjct: 855 aaaaggcaatgagagaagattgacaggtcgacatgagactgctgatatcaacactttctc 914
Query: 916 atggggtgttgcagaccgtggagcatctgttcgcgttggccgggatacagaaaaggaagg 975
||||| ||||| | | ||||| ||||| || |||||||| ||||| || || | ||
Sbjct: 915 ctggggagttgcgaataggggagcttctgtccgtgttggccgtgatactgagaaaaatgg 974
Query: 976 aaaagggtattttgaggacagaaggcctgcatcaaacatggatccatatgttgttacttc 1035
|||||| |||||||| || || ||||| |||||||||||||||||||| |||| |||||
Sbjct: 975 aaaaggttattttgaagataggaggccatcatcaaacatggatccatatattgtgacttc 1034
Query: 1036 catgattgcagaaaccaccatcctgtggaa 1065
|||||||| ||||||||||| || |||||
Sbjct: 1035 aatgattgctgaaaccaccattctctggaa 1064
>56871.m000011 glutamine synthetase plant, putative
Length = 167
Score = 113 bits (57), Expect = 2e-24
Identities = 120/141 (85%)
Strand = Plus / Plus
Query: 76 gatcggtggatctggcatggacttgaggagcaaagcaaggaccctctctggaccagtcag 135
||||||||||||||||||||| ||||||||||||| ||||| || |||| ||||| ||
Sbjct: 24 gatcggtggatctggcatggatatgaggagcaaagccaggactctacctggtccagttag 83
Query: 136 tgatccttcaaagcttccaaagtggaactacgatggttccagcacaggccaggctcctgg 195
||||||||| |||||||| || ||||| || ||||| || || || || || ||||||||
Sbjct: 84 tgatccttcgaagcttcctaaatggaattatgatggctctagtactggtcaagctcctgg 143
Query: 196 agaagatagtgaagtgatcct 216
||||| ||||||||||||||
Sbjct: 144 tgaagacagtgaagtgatcct 164
>29726.m003921 glutamine synthetase plant, putative
Length = 1299
Score = 95.6 bits (48), Expect = 5e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 524 cattacaaggcttgtttatatgctggtgtcaacattagtggtattaatggagaagttatg 583
||||||||||||||||| |||||||| ||||||||||||||| ||||| || ||||||
Sbjct: 703 cattacaaggcttgtttgtatgctggaatcaacattagtggtaccaatggggaggttatg 762
Query: 584 cctggccagtgggagt 599
||||||||||||||||
Sbjct: 763 cctggccagtgggagt 778