Jatropha Genome Database

JcCA0302271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0302271.10 + phase: 0 
         (192 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002048 Cytochrome c oxidase polypeptide Vc, putative           246   4e-65
30076.m004656 Cytochrome c oxidase polypeptide Vc, putative           192   5e-49

>29647.m002048 Cytochrome c oxidase polypeptide Vc, putative
          Length = 192

 Score =  246 bits (124), Expect = 4e-65
 Identities = 163/176 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctggtggtaagattgctcatgctaccttgaaaggacctagtgttgtgaaggagata 60
           ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| 
Sbjct: 1   atggctggtggtaggattgctcatgctaccttgaagggaccaagtgttgtgaaggagatt 60

                                                                       
Query: 61  tgtattggtattgcacttggcttggctgcaggtggtctctggaagatgcatcactggaat 120
           ||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||||
Sbjct: 61  tgtattggtattgcactcggattggccgctggtggtctttggaagatgcatcactggaat 120

                                                                   
Query: 121 gaacagaggaaggtgagagcattttatgacttgctggagaaaggcgagatcagtgt 176
           || || ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 121 gagcaaaggaaggtgagagcattttatgacttgcttgagaagggcgagatcagtgt 176


>30076.m004656 Cytochrome c oxidase polypeptide Vc, putative
          Length = 192

 Score =  192 bits (97), Expect = 5e-49
 Identities = 154/173 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctggtggtaagattgctcatgctaccttgaaaggacctagtgttgtgaaggagata 60
           |||||||| || | |||||||||||| ||| |||||||||| |||||||| |||||||||
Sbjct: 1   atggctggcggcaggattgctcatgccaccctgaaaggacccagtgttgtcaaggagata 60

                                                                       
Query: 61  tgtattggtattgcacttggcttggctgcaggtggtctctggaagatgcatcactggaat 120
           ||||| || ||||||||||| |||||||| |||||||| ||||| |||||||||||||||
Sbjct: 61  tgtatcgggattgcacttggattggctgctggtggtctttggaaaatgcatcactggaat 120

                                                                
Query: 121 gaacagaggaaggtgagagcattttatgacttgctggagaaaggcgagatcag 173
           || |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 121 gagcagaggaaagtgagggcattttatgatttgctggaaaaaggtgagatcag 173