Jatropha Genome Database
- JcCA0301531.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0301531.10 + phase: 0 /pseudo/partial
(1158 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30147.m014418 Auxin response factor, putative 579 e-164
30128.m008545 transcription factor, putative 68 1e-10
30068.m002516 hypothetical protein 62 8e-09
>30147.m014418 Auxin response factor, putative
Length = 2535
Score = 579 bits (292), Expect = e-164
Identities = 941/1149 (81%), Gaps = 15/1149 (1%)
Strand = Plus / Plus
Query: 7 tagatgatgagaagattgatgtggtatctgcttcaagaagacatggatcagagagttgga 66
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 1394 tagatgacgagaagattgacgt---atctgcttcaagaagacatggatcagagagttgga 1450
Query: 67 tacccgtctgggaggcaggagccaacttacacggatctgttatcaggctttggggcaaat 126
| | || ||||||| ||||| || || || ||| || ||||||| ||||| |||||
Sbjct: 1451 atctc-tcagggaggccagagcctacctatacagatttgctatcaggatttggatcaaat 1509
Query: 127 gctgattcctcccatgggtttggttcatcctttgttgaccagtcttctacaactgccagc 186
|||||||| ||||||||||| ||||||||||||||| || || | ||| |||| ||
Sbjct: 1510 gctgattcttcccatgggttcacttcatcctttgttgatcaagctgcaacagctgctagt 1569
Query: 187 agaaagcttgttttggatcaggaaggcaagtttaacttgcttgctagtccgtggccttta 246
||||| ||||| || ||||||||||||||||||||||||||||| | || ||| | |||
Sbjct: 1570 agaaaacttgtattagatcaggaaggcaagtttaacttgcttgccaacccatggtcctta 1629
Query: 247 atgtcatcaggtctgtcgcaaaagttatcagaatctaatacaaaggctactttacaaggt 306
||||||||||||||||||| |||||||| || ||||||||||||| | || ||||||||
Sbjct: 1630 atgtcatcaggtctgtcgctcaagttatcggagtctaatacaaaggtttctgtacaaggt 1689
Query: 307 cgtgatttgccttaccagatacgggggaatatgagatgcagtgcatttagtgagtatccc 366
|||||| | |||||||| ||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 1690 cgtgatataccttaccaagcacgaggaaatatcagatgcagtgctttcagtgagtatccc 1749
Query: 367 atgcttaatgctcataggatggagcaatcgcatggaaattggttgatgccacccccacaa 426
|| || ||| |||||| | || || ||||||||||||||||||||||| ||||| | |
Sbjct: 1750 atactccatggtcatagagttgaccagtcgcatggaaattggttgatgcctccccctcca 1809
Query: 427 acgtctcattttgataatcatgctcatgcgagagaattggtgccaaaacctgcattggta 486
| |||||||||||||||| || ||||| ||||| || ||||||| ||
Sbjct: 1810 ccctctcattttgataatctcgcacatgcaagagagccagtttcaaaaccct------ta 1863
Query: 487 caagaacatgagacagggaaacctgctgaaggaaattgtaggctctttggcattcccttg 546
||||||||||| | |||||| | | || ||||| |||| |||||||| |||||| ||
Sbjct: 1864 caagaacatgatattgggaaatccacagatggaaactgtaaactctttggtattcccctg 1923
Query: 547 tttcgtaatccagttacaaccgagccagcagcctcacatagaaacatggtcagtgagcct 606
||| ||||||| ||| || | ||||||||| | ||||||||||||||||| | ||| ||
Sbjct: 1924 tttagtaatcctgttgcaccagagccagcaacatcacatagaaacatggtgaatgaacc- 1982
Query: 607 ctcaatcatacacattcatca-agtcatcgacttcatgtattagagtcagatcaaaggtc 665
| ||| || | ||| | ||| || || | || || || | | || || |||||||||||
Sbjct: 1983 cacaa-cagcc-catcc-tcagagccaccaacctcgtgcactggaatctgatcaaaggtc 2039
Query: 666 agaccagtccaaaggttgtaaaatggctgatgataatgaacatgagaaacaatatcaagc 725
||| || ||| | || ||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 2040 agaacaacccagggtttctaaaatggctgatgataatgagcatgagaaacaattccaatc 2099
Query: 726 tggtctcctgcatacgagggacaatcaaggcaaagctcaaaatggttcgacaaggagttg 785
||||| | ||||||||||| | |||||||||| |||||| |||||| || ||||||||
Sbjct: 2100 tggtcatttacatacgagggatattcaaggcaaaactcaaactggttcaactaggagttg 2159
Query: 786 tactaaggttcaaaagcaggggattgcacttggtaggtctgttgaccttactaagttcgg 845
|||||||||||| |||||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct: 2160 tactaaggttcataagcagggaattgcacttggtaggtctgttgatcttgccaagttcaa 2219
Query: 846 caattatgatgagttgattgctgaattggataggttgtttgagtttgacggtgaactcct 905
|| ||||||||||||||||||||||||||| || ||||||| |||| |||||| | |
Sbjct: 2220 taactatgatgagttgattgctgaattggatcggctgtttgaatttggtggtgaattaat 2279
Query: 906 ggctcccaaaaggaattggttgattgtgtatacggatgatgaaggcgatatgatgcttgt 965
||||||||| || ||||||||||| ||||| || ||||| || ||||||||||||||
Sbjct: 2280 ttctcccaaaaaaaactggttgattgtatatactgacgatgagggtgatatgatgcttgt 2339
Query: 966 tggagatgatccctggcaggaatttgttggcatggctcggaagattttcatctacactag 1025
||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct: 2340 tggagatgacccctggcaggaatttgttggcatggttcgaaagatattcatctacacaag 2399
Query: 1026 agaggaggtgcagaagatgaatccagggaccctgaattcaaagggggatgagaatttgtt 1085
|||||||| || |||||||||||||| ||| | ||||| ||||| |||||| || ||||
Sbjct: 2400 ggaggaggtacaaaagatgaatccaggaaccttaaattctaagggtgatgagcatctgtt 2459
Query: 1086 ggaggtggacggtgtggatgcaaaagaagtgaaacgtttgccacttccttcagcacatag 1145
||| ||||| ||||||||||| |||||||| ||| | | |||||||| | ||||| ||
Sbjct: 2460 ggatgtggatggtgtggatgctaaagaagtaaaatgcgttccacttccccctgcacaaag 2519
Query: 1146 caccgagaa 1154
|||||||||
Sbjct: 2520 caccgagaa 2528
>30128.m008545 transcription factor, putative
Length = 2364
Score = 67.9 bits (34), Expect = 1e-10
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 940 gatgatgaaggcgatatgatgcttgttggagatgatccctggcaggaatt 989
||||| || ||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 2182 gatgacgagggcgatatgatgcttgtgggagatgatccctgggaggaatt 2231
>30068.m002516 hypothetical protein
Length = 2085
Score = 61.9 bits (31), Expect = 8e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 928 attgtgtatacggatgatgaaggcgatatgatgcttgttggagatga 974
||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 1891 attgtctatactgatgatgaaggggatatgatgcttgttggtgatga 1937