Jatropha Genome Database

JcCA0301151.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0301151.20 + phase: 0 /partial
         (742 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003591 conserved hypothetical protein                          313   8e-85

>29842.m003591 conserved hypothetical protein
          Length = 4200

 Score =  313 bits (158), Expect = 8e-85
 Identities = 263/298 (88%)
 Strand = Plus / Plus

                                                                       
Query: 444 cttggatgatgaggatgctatttggaagcgtaccagggctcgttattcacttgcaagctt 503
           ||||||||| |||||||||||||||||||| || |||||  | ||||| ||||| || ||
Sbjct: 411 cttggatgacgaggatgctatttggaagcggactagggcaagatattctcttgctagttt 470

                                                                       
Query: 504 cactcttgatgaacttgagacttttctgcaagaaactgatgacgaggatgaccttcagaa 563
            || || |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 471 tacgctcgatgaacttgagacttttcttcaggaaactgatgacgaggatgaccttcagaa 530

                                                                       
Query: 564 tgttgatgatgaagaagagtataggaaatttcttgctgctgttttacagggtggagatgg 623
            |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 531 cgttgatgatgaagaagagtataggaagtttcttgctgctgttttacaaggtggagatgg 590

                                                                       
Query: 624 tgatgaccaatctactcaggatattgaaaatgttgacgatgaagatgaggataatgatgc 683
            ||||  ||||||||||  |||| ||||| |||||| ||||| |||||||||||||||||
Sbjct: 591 ggatgggcaatctactcgagataatgaaactgttgatgatgaggatgaggataatgatgc 650

                                                                     
Query: 684 agactttgaaattgaactggaagagcttcttgagagtgacgttgatgacagtaaaagg 741
            || ||||| |||||||| |||||| | |||||||||||  ||||||| |||||||||
Sbjct: 651 tgattttgagattgaacttgaagagttgcttgagagtgatattgatgatagtaaaagg 708



 Score =  131 bits (66), Expect = 7e-30
 Identities = 147/174 (84%)
 Strand = Plus / Plus

                                                                       
Query: 111 ggatgacgatgaagaggaggaggaagatattgattttaacccttttctgaagggaacacc 170
           |||||| || ||||| || || |||||| |||||||||| |||||||| |||||||||||
Sbjct: 87  ggatgatgaagaagatgaagatgaagatgttgattttaatccttttctaaagggaacacc 146

                                                                       
Query: 171 ttcaccagaagcttcttcgagtttaagctctgaagttgaaggtcttgatggtaattcatc 230
           |||||||||||||||||| || || ||||||||||| ||||   | ||||||||||| ||
Sbjct: 147 ttcaccagaagcttcttctagcttgagctctgaagtcgaagaattggatggtaattcttc 206

                                                                 
Query: 231 aaaacccacaaccggtgaggtgcgaaactatgctgttggagattctgagcatgg 284
           |||| | |  || | |||||||| ||| |||| |||||| ||||||||||||||
Sbjct: 207 aaaaactattactgctgaggtgcaaaattatgatgttggtgattctgagcatgg 260