Jatropha Genome Database

JcCA0300671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0300671.10 - phase: 0 /partial
         (642 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29642.m000276 conserved hypothetical protein                          115   3e-25
27752.m000045 conserved hypothetical protein                           60   2e-08
29630.m000832 ubiquitin-protein ligase, putative                       56   3e-07

>29642.m000276 conserved hypothetical protein
          Length = 1233

 Score =  115 bits (58), Expect = 3e-25
 Identities = 277/350 (79%)
 Strand = Plus / Plus

                                                                       
Query: 42  atcagaggttcaagttctaactcttggaaatggaagcttgaactggagaatcaaagggaa 101
           |||||||||||| ||| ||||| |||| ||||||||||| | |||||||| ||||||| |
Sbjct: 609 atcagaggttcaggttttaactgttggcaatggaagcttaacctggagaagcaaagggga 668

                                                                       
Query: 102 aacatcttaccaacttcttggaatgtcatcgggagttctggtcaatggaagacttcactg 161
           |||||| ||||||||||||||||   ||||    ||  | || || ||||||||||| ||
Sbjct: 669 aacatcataccaacttcttggaaacccatctcatgtggtagtgaacggaagacttcattg 728

                                                                       
Query: 162 gttaacttgtcgacatagatatcaatcacttcgtacgctcatctcctttgacctagaaga 221
           ||| |  |||||| | ||| |||| |||||||| | |||||||||||| ||||| | |||
Sbjct: 729 gttgagctgtcgatacagaaatcagtcacttcgaaggctcatctccttcgacctggcaga 788

                                                                       
Query: 222 tgaaaaatttcgagaggttccagttcctagtcgtgaatcttttggaaggcattgttcccg 281
            ||| |||| |||||||||||   |||   | | |     ||||| ||||| ||||| | 
Sbjct: 789 cgaacaattccgagaggttccgtgtccggttggagcgagctttggcaggcactgttctca 848

                                                                       
Query: 282 tctagtgattctaaaaggttgtctttcggcagttaatcaaggctttagaagcctttacat 341
           ||||| || ||||| ||| ||||| || |  |||   ||||| |||||||| ||||||||
Sbjct: 849 tctagcgactctaagaggctgtctctcaggggttgtacaaggttttagaagactttacat 908

                                                             
Query: 342 ttgggttatgaaagaatatggagtgaaggagtcttggatcaaagaattca 391
            ||||| |||||||||||||| |||||||| |||||| |||| |||||||
Sbjct: 909 atgggtcatgaaagaatatggggtgaaggaatcttgggtcaaggaattca 958


>27752.m000045 conserved hypothetical protein
          Length = 1152

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 341 tttgggttatgaaagaatatggagtgaaggagtcttggatcaaagaattcagtattgg 398
           ||||||||||||| || |||||  |||||||||||||||| |||||||| || |||||
Sbjct: 854 tttgggttatgaaggattatggcttgaaggagtcttggataaaagaatttagcattgg 911


>29630.m000832 ubiquitin-protein ligase, putative
          Length = 1245

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 340 atttgggttatgaaagaatatggagtgaaggagtcttgga 379
           |||||||| |||||||||||||||| |||||| |||||||
Sbjct: 844 atttgggtgatgaaagaatatggagcgaaggattcttgga 883