Jatropha Genome Database
- JcCA0299701.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0299701.10 - phase: 2 /pseudo/partial
(1692 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30162.m001289 cellulose synthase, putative 650 0.0
29904.m002970 Cellulose synthase A catalytic subunit 1 [UDP-form... 117 2e-25
30073.m002256 Cellulose synthase A catalytic subunit 3 [UDP-form... 68 2e-10
30068.m002658 cellulose synthase, putative 60 5e-08
29986.m001674 Cellulose synthase A catalytic subunit 3 [UDP-form... 56 7e-07
>30162.m001289 cellulose synthase, putative
Length = 3369
Score = 650 bits (328), Expect = 0.0
Identities = 713/840 (84%), Gaps = 1/840 (0%)
Strand = Plus / Plus
Query: 838 actgccaatactattctttcaattctagcagttgattaccctgtggagaaaatagcttgc 897
|||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct: 1150 actgccaatactatcctttcaattctatcagtagattaccctgtggagaagatagcttgc 1209
Query: 898 tacgtttctgatgatggaggtgctctacttacgtttgaggcaatggctgaggcttgcaag 957
|| | ||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1210 tatatatctgatgatggaggtgcactccttacttttgaggcaatggctgaggc-tgcaag 1268
Query: 958 ctttgctgatttatgggttccattttgtcgaaaacatgatatcgaaccgagaaatcctga 1017
|||||||||| | |||||||| ||||| ||||||||| |||| || || || ||||||||
Sbjct: 1269 ctttgctgatctgtgggttcctttttgccgaaaacataatattgagccaaggaatcctga 1328
Query: 1018 tgcctacttcagcttaaaggttgatccgactaagaacaaaagtagacctgattttgtgaa 1077
||||||||||| |||| |||||||| || |||||||| || || |||||||||||||
Sbjct: 1329 aacctacttcagcctaaaagttgatccaacgaagaacaagagcaggactgattttgtgaa 1388
Query: 1078 agacagaagaaaaataaagagagaatacgatgaattcaaagtgagaatcaatggacttgg 1137
|||||| |||| ||||||| | || ||||| || ||||| ||||| |||||||| ||
Sbjct: 1389 agacaggagaagaataaagcgggagtacgacgagttcaaggtgaggatcaatgggctccc 1448
Query: 1138 ggactccattagaaggagatcggatgcttttaatgcgagagaggaaatgaaaatgctgaa 1197
|| || || || || ||||| |||||||||||||| |||||||| ||||||||| ||||
Sbjct: 1449 agattcaatcaggagaagatcagatgcttttaatgcaagagaggagatgaaaatgttgaa 1508
Query: 1198 gcacattagagaaagtggaggtgatcctatggagcctataaaagtccagaagggtacatg 1257
|||||| || || |||| || ||||||||||||||||||||| ||||||| | ||||||
Sbjct: 1509 gcacatgagggagagtgcagctgatcctatggagcctataaagatccagaaagctacatg 1568
Query: 1258 gatggcagacggcacacattggcctggaagttggtcagttccagcacctgaacattccaa 1317
||||||||| |||| || |||||||||| |||| | || || ||||||||||||||
Sbjct: 1569 gatggcagatggcagccactggcctggaacttgggcctcccctgctcctgaacattccaa 1628
Query: 1318 aggcgaccatgccggaattcttcaggtcatgctcaagccccccagtcctgacccattaat 1377
||| |||||||| |||||||||||||| ||||| ||||| || || ||||||||| | ||
Sbjct: 1629 aggtgaccatgctggaattcttcaggtgatgcttaagcctcctagccctgacccacttat 1688
Query: 1378 gggaggtgcagatgatagaatcatcgatttcacagataccgatatccgccttccaatgtt 1437
||||||||||||||| | || || || ||||| || ||||| |||||||| |||||
Sbjct: 1689 gggaggtgcagatgacaagataatagacttcacggacgttgatatacgccttcctatgtt 1748
Query: 1438 cgtatatgtctcacgtgaaaagagaccaggctatgaccataacaagaaagctggtgctat 1497
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 1749 tgtatatgtctcgcgtgaaaagaggccaggctatgaccataacaagaaagctggcgcaat 1808
Query: 1498 gaattgcttggtgcgagcatctgctattttatctaatggccccttcattctcaacttgga 1557
|||| |||||| ||||| ||||| ||| | || |||||||| ||||||||||| |||||
Sbjct: 1809 gaatgccttggtacgagcttctgccattctgtccaatggccctttcattctcaatttgga 1868
Query: 1558 ttgtgatcactacatttataactgtaaagctatccgagaaggaatgtgcttcatgttgga 1617
|||||||| ||||| || ||||||||||| ||| |||||||||||||||||||| ||||
Sbjct: 1869 ctgtgatcattacatctacaactgtaaagccatcagagaaggaatgtgcttcatgatgga 1928
Query: 1618 tcgaggaggcgaaaaaatctgctacattcaattccctcaaagatttgaaggcatcgatcc 1677
|||| |||||||| ||||||||||| || || || ||||||||||||||||| |||||
Sbjct: 1929 cagaggtggcgaaaacatctgctacatacagtttccccaaagatttgaaggcattgatcc 1988
Score = 480 bits (242), Expect = e-134
Identities = 626/750 (83%), Gaps = 8/750 (1%)
Strand = Plus / Plus
Query: 97 aaatttgcaagaagaacttcaagcgggagatatgtgagtctatcaagagaggatcttgac 156
|||||||| || || ||||| ||||| |||||||| ||||| ||| | || || ||||||
Sbjct: 100 aaatttgccaggaggacttcgagcggaagatatgttagtctttcacgtgaagaccttgac 159
Query: 157 atgtcaggagaaatatcaggtgattacatgaattatacagtgcatattcctcctacgccg 216
||||||||||| ||||||||||| |||||||| || || || || |||||||| || ||
Sbjct: 160 atgtcaggagagatatcaggtgactacatgaactacaccgtacacattcctcccacccct 219
Query: 217 gataatcaaccaatggatacgtcggtggcggtgaaagcagaagagcaatatgtttcgaat 276
||||| || ||||||||| | || || || || ||||| |||||||| ||||| || |||
Sbjct: 220 gataaccagccaatggattcctctgtcgccgtaaaagctgaagagcagtatgtctccaat 279
Query: 277 tct-ttgttaccggtggattcaacagcgtaacgcgtgcacatctcatggataaggtaata 335
||| || |||| || ||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 280 tctctttttactggcggattcaacagtgtaacccgtgcacatctcatggacaaggtcatt 339
Query: 336 gactctgaggttacacatcctcaaatggctggtgctaaaggctcttcttgtgcaatgcct 395
|| ||||| || ||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 340 gaatctgaagtcacacatcctcagatggctggatccaaaggctcttcttgtgcaatgcct 399
Query: 396 gcttgtgatggtaagattatgaaggatgaaagaggaaatgatgtaatgccttgtgaatgc 455
||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 400 gcttgtgatggcaagatcatgaaggatgaaagaggaaatgatgtcatcccttgtgaatgc 459
Query: 456 aggttcaagatttgcagggattgctatatggatgcccagaaagagacaggtctatgtcca 515
|||||||| ||||| ||||||||||| | || ||||| || ||||| ||| ||||||||
Sbjct: 460 aggttcaaaatttgtagggattgctaccttgacgcccaaaaggagacgggtttatgtcca 519
Query: 516 ggatgcaaagagaattacagagttggagattatgacgatg-atttccagatttttctagt 574
|| ||||| ||| ||| | ||||||||||||||| |||| | |||| ||||| ||||||
Sbjct: 520 ggctgcaaggagccttataaagttggagattatgatgatgaagttcctgatttctctagt 579
Query: 575 ggagcactgccattgccagctccaagcaaaggtga---taacatgacaatgacgaagaga 631
||||| ||||||||||| || |||| |||| ||| |||||| |||||| ||| |||
Sbjct: 580 ggagctctgccattgcctgcgccaaataaagatgaccgcaacatgtcaatgatgaaaaga 639
Query: 632 aaccaaacaggagatttcgatcacaatcgatggttgttcgaaacaaaaggaacttacggg 691
|||||||| || || || |||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 640 aaccaaactggcgaatttgatcacaaccgctggttgttcgaaacgaaaggtacttacggc 699
Query: 692 tatggtaatgcctattggcctcaagatgattcgta---cgatgacgagggtgaaggactg 748
||||||||||||| |||||||| ||||| ||| |||||| || | ||| ||| |
Sbjct: 700 tatggtaatgccttctggcctcaggatgacatgtacggcgatgatgacgatgatggattc 759
Query: 749 aagggtgggatcttagaagatatggataaaccatggaagccactgagtcgcacaatgaca 808
|| || || || | ||| ||||||||||||| |||||||| || ||||||| |||||||
Sbjct: 760 aaaggcggcatggttgaaaatatggataaaccgtggaagcccctcagtcgcaaaatgaca 819
Query: 809 atgccagcagccattatgagtccgtacaga 838
||||||||||| ||||||||||| ||||||
Sbjct: 820 atgccagcagcaattatgagtccctacaga 849
>29904.m002970 Cellulose synthase A catalytic subunit 1 [UDP-forming],
putative
Length = 3180
Score = 117 bits (59), Expect = 2e-25
Identities = 212/263 (80%)
Strand = Plus / Plus
Query: 1430 ccaatgttcgtatatgtctcacgtgaaaagagaccaggctatgaccataacaagaaagct 1489
|||||||| | |||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 1537 ccaatgtttgcatatgtctcacgagaaaagaggcctggttatgaccataacaagaaagca 1596
Query: 1490 ggtgctatgaattgcttggtgcgagcatctgctattttatctaatggccccttcattctc 1549
|| || ||||| | |||| |||| || ||||| || || ||||| || || || |||
Sbjct: 1597 ggagccatgaacgccatggttagagcttcagctatattgtccaatggaccatttatactc 1656
Query: 1550 aacttggattgtgatcactacatttataactgtaaagctatccgagaaggaatgtgcttc 1609
|| |||||||||||||| ||||| ||||| ||| ||||||| || || || ||||||||
Sbjct: 1657 aatttggattgtgatcattacatctataattgtcaagctatacgggagggtatgtgcttt 1716
Query: 1610 atgttggatcgaggaggcgaaaaaatctgctacattcaattccctcaaagatttgaaggc 1669
||| ||||| |||| || || || |||||||| ||||| || ||||||||||||||
Sbjct: 1717 atgatggatagaggtggtgatcgtatttgctacatccaatttccacaaagatttgaaggg 1776
Query: 1670 atcgatccttccgatcgatatgc 1692
|| ||||| || ||| |||||||
Sbjct: 1777 attgatccgtcagatagatatgc 1799
Score = 58.0 bits (29), Expect = 2e-07
Identities = 96/117 (82%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 902 tttctgatgatggaggtgctctacttacgtttgaggcaatggctgaggcttgcaagcttt 961
|||||||||| || || || |||| || |||||||| ||||||||||| | | |||||
Sbjct: 1004 tttctgatgacggtggcgccatactcacctttgaggccatggctgaggcc-gtacgcttt 1062
Query: 962 gctgatttatgggttccattttgtcgaaaacatgatatcgaaccgagaaatcctgat 1018
||||| | ||||| ||||||||| ||||||| || ||||| || ||||||||||||
Sbjct: 1063 gctgaggtttgggtgccattttgtagaaaacacgacatcgagccaagaaatcctgat 1119
>30073.m002256 Cellulose synthase A catalytic subunit 3 [UDP-forming],
putative
Length = 3432
Score = 67.9 bits (34), Expect = 2e-10
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 1529 tctaatggccccttcattctcaacttggattgtgatcactacatttataactgtaaagct 1588
||||||||||| |||||||||||| | |||||||| ||||| ||||| || | ||||
Sbjct: 1864 tctaatggcccattcattctcaaccttgattgtgaccactatatttacaattcccaagca 1923
Query: 1589 atccgagaaggaatgtgcttcatgttggatcgaggagg 1626
|| | ||||| |||||||||||| |||||||||||||
Sbjct: 1924 atgagggaaggcatgtgcttcatgatggatcgaggagg 1961
Score = 60.0 bits (30), Expect = 5e-08
Identities = 130/162 (80%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 838 actgccaatactattctttcaattctagcagttgattaccctgtggagaaaatagcttgc 897
|||||||| || ||| | ||||||||||| | |||||| || || || ||| | |||||
Sbjct: 1168 actgccaacacaattttgtcaattctagctgctgattatccggtcgaaaaacttgcttgt 1227
Query: 898 tacgtttctgatgatggaggtgctctacttacgtttgaggcaatggctgaggcttgcaag 957
|| || ||||||||||||||||| || || || |||||||| ||||| || || |||||
Sbjct: 1228 tatgtatctgatgatggaggtgcacttctaacatttgaggccatggcagaagc-agcaag 1286
Query: 958 ctttgctgatttatgggttccattttgtcgaaaacatgatat 999
|||||| || | ||||| || || ||||| |||||||||||
Sbjct: 1287 ttttgctaatatttgggtgcctttctgtcgtaaacatgatat 1328
Score = 54.0 bits (27), Expect = 3e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 176 gtgattacatgaattatacagtgcatattcctcctacgccggataatcaaccaatggat 234
|||||| |||||| |||||||||||||| || ||||| || ||||| ||||| ||||||
Sbjct: 170 gtgatttcatgaactatacagtgcatataccacctactcctgataaccaacccatggat 228
>30068.m002658 cellulose synthase, putative
Length = 3261
Score = 60.0 bits (30), Expect = 5e-08
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 838 actgccaatactattctttcaattctagcagttgattaccctgtggagaaaatagcttgc 897
||||| ||||||||||| || ||||| || | ||| ||||| || |||||| || | ||
Sbjct: 1024 actgcaaatactattctgtctattcttgccgctgactacccagttgagaaactatcatgt 1083
Query: 898 tacgtttctgatgatggaggtgctctacttacgtttgaggcaatggctgaggct 951
|| || |||||||||||||||||||| | || |||||||| ||||| ||||||
Sbjct: 1084 tatgtctctgatgatggaggtgctcttttaacttttgaggccatggcagaggct 1137
>29986.m001674 Cellulose synthase A catalytic subunit 3 [UDP-forming],
putative
Length = 3489
Score = 56.0 bits (28), Expect = 7e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1442 tatgtctcacgtgaaaagagaccaggctatgaccataacaagaaagctggtgctatgaat 1501
||||| || ||||| || || ||||||||||| || |||||||||||||| |||||||||
Sbjct: 1822 tatgtgtctcgtgagaaaaggccaggctatgatcacaacaagaaagctggagctatgaat 1881