Jatropha Genome Database
- JcCA0297911.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0297911.20 - phase: 1 /partial
(1040 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29693.m002023 RNA binding protein, putative 1102 0.0
>29693.m002023 RNA binding protein, putative
Length = 2046
Score = 1102 bits (556), Expect = 0.0
Identities = 913/1032 (88%)
Strand = Plus / Plus
Query: 9 gattccatatggagagactcaattgatgatgggtgtcataacccttcttggccagagttc 68
||||| || |||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1012 gattcaatttggaaagactcaattgatgatgggtgtcataacccttcttggccggaattt 1071
Query: 69 gtcccatccagtggaaaagaaaaaacccggaaaatggattacatccgatatggaggtcat 128
|| ||||| || || || || || || ||||||| |||||||| |||||||||||||||
Sbjct: 1072 gttccatctagcgggaaggagaagactaggaaaatagattacattcgatatggaggtcat 1131
Query: 129 tttctgattggcattcgaggccccagagaggatgcagtgcaaattcggaaggaaatcatc 188
||| ||||||| ||||||| || || |||||||||||||||| | ||| ||||| ||
Sbjct: 1132 tttttgattggtgttcgagggcctagggaggatgcagtgcaaacgcagaaagaaattatt 1191
Query: 189 gagttttgtgatgctaagcttgggatcaggttggataattctaaaattgagattgaacac 248
||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 1192 gagttttgtgagaataagttggggatcaggttggataattctaagattgagattgaacac 1251
Query: 249 ataacaaggggaattcagtttttggatcatataatttgccgaagagtgatataccccaca 308
||| | ||||||||||||||||| |||||||||||||| || ||||| ||| |||| |||
Sbjct: 1252 atatctaggggaattcagtttttagatcatataatttgtcgtagagttatacaccctaca 1311
Query: 309 cttcattacacagcaagtggaggcaaaattgtgagtgaaaggggtgtggggactttactt 368
|||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||| |||
Sbjct: 1312 cttcattatacagcaagtggaggtaaaattgtaagtgaaaagggtgtggggactttgctt 1371
Query: 369 tcagttactgctagcttgcaacagtgtattcgccaatttaggcgccttcagtttgttaaa 428
|| |||||||||||||||||||||||||| || ||||||||||| ||| ||||||||
Sbjct: 1372 tctgttactgctagcttgcaacagtgtatccggcaatttaggcgacttgcatttgttaag 1431
Query: 429 ggtgataaggatccagagccgttgccctgcaatcctatgctctattcaagtcaagctcat 488
|| ||||| ||||||||||| ||||| || ||||||||||| |||||||||||||||||
Sbjct: 1432 ggcgataaagatccagagccattgccttgtaatcctatgctttattcaagtcaagctcac 1491
Query: 489 actaatgcccaaatgaacaagtttcttgagaccatggctgattggtatcgatatgctgat 548
| |||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1492 agtaatgcgcaaatgaacaagtttcttgagaccatggctgaatggtatagatatgctgat 1551
Query: 549 aatcgaaagaaagttgttggattttgtgcatatgtgatacgcagctcattggcgaaactt 608
|| |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 1552 aaccgaaagaaagttgtgggattttgtgcatatgtgatacgtagctcattagctaaactt 1611
Query: 609 tatgctgccaggtatagactaaaatctcgtgctaaggtatacaagattgcttcgcgtgat 668
||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct: 1612 tatgctgcccggtatagactaaaatctcgtgctaaggtgtataagattgcttcacgtaat 1671
Query: 669 ctcagtcgaccactgagggagagtagtaacaattctgcacccgagtattctgatcttttg 728
||||||||||| || |||||||||||||| | |||||| || || |||||||||||||||
Sbjct: 1672 ctcagtcgaccgcttagggagagtagtaatagttctgctcctgaatattctgatcttttg 1731
Query: 729 aggatgggacttgtggatgcaattgaaggtgttcaattctcccatatgtctttgattccg 788
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1732 aggatgggacttgtggatgcaattgaaggtgttcaattctcccatatgtcttcgattccc 1791
Query: 789 tcttgtgattacactccatttccaaggaactggatcccagatcatgaacgggttttgcat 848
||||||||||| |||||||||||||| | ||| | ||||||||||||| ||||||||||
Sbjct: 1792 tcttgtgattatactccatttccaagaatttgggttccagatcatgaacaggttttgcat 1851
Query: 849 gaatacattagactacaagacccaaaattcttttgtgagttatggagatcaataaaacat 908
|| || ||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 1852 gagtatattagactacaagacccaaaattcttttgcgacttgcatagatcaataaaacat 1911
Query: 909 caaagtttaactttgcctcaagatgagatatctgagattgtctgggattacaagactctt 968
||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1912 caaggtttgactttgcctcaagatgagatatctgagattgtctgggaatacaagaccctt 1971
Query: 969 ggaatccgaaggtaccaatctagtggtgaaaaagagccaaataatgcttctgaaaagttg 1028
||||| || || ||||||||||||| |||||||| | ||||| | || | ||||| ||
Sbjct: 1972 ggaattcggagaaaccaatctagtggagaaaaagaactaaatagtactcccgaaaatgtg 2031
Query: 1029 gacgagacttca 1040
||| ||||||||
Sbjct: 2032 gacaagacttca 2043