Jatropha Genome Database

JcCA0297911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0297911.10 - phase: 0 
         (303 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002025 60S ribosomal protein L18a, putative                     76   1e-13

>29693.m002025 60S ribosomal protein L18a, putative
          Length = 912

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 220 acaggttatgcggttattgagggaaggcccgtgagagaacacaggcttccatgttgtggt 279
           |||||||||||||||||||| |  || ||| |||  ||||| ||||| ||||| ||||||
Sbjct: 196 acaggttatgcggttattgaagctagacccctgattgaacataggctaccatgctgtggt 255

                                 
Query: 280 ttgggcatgggatggttcttgt 301
            |||||||||||||||||||||
Sbjct: 256 ctgggcatgggatggttcttgt 277



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 40  ggcaacccgcagacccagtattatgggacttttcaaggcgtcgccaattactatccttct 99
           |||||||||||   | ||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 34  ggcaacccgcaaggcgagtattatgggacatttcagggcgtcgccaactactacccttct 93

              
Query: 100 gtt 102
           |||
Sbjct: 94  gtt 96