Jatropha Genome Database

JcCA0296911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0296911.10 - phase: 0 /partial
         (890 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28838.m000254 starch synthase, putative                               196   2e-49

>28838.m000254 starch synthase, putative
          Length = 2265

 Score =  196 bits (99), Expect = 2e-49
 Identities = 147/163 (90%)
 Strand = Plus / Plus

                                                                       
Query: 725 ctatgactgaacatgcaaaacccccacctttggctggtgccaatgtcatgaatgttattt 784
           ||||||||||| || ||||| |||| ||||||||||| ||||| || ||||| |||||  
Sbjct: 740 ctatgactgaagatacaaaatcccctcctttggctggggccaacgttatgaacgttatcc 799

                                                                       
Query: 785 tggttgctgcagaatgtgctccatggtctaaaacaggtggccttggagatgttgctgggt 844
           ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 800 tggtatctgcagaatgtgctccatggtctaaaacaggtggcctcggagatgttgctgggt 859

                                                      
Query: 845 ctttacctaaggctttagctaggcgtggacatcgagttatggt 887
           | ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 860 ccttaccaaaggctttagctaggcgtggacatcgtgttatggt 902



 Score =  161 bits (81), Expect = 9e-39
 Identities = 213/257 (82%)
 Strand = Plus / Plus

                                                                       
Query: 126 tagttttgctgtttctaatggtgggttttctttgagatttaagcctgtgagagctactgc 185
           |||||||||| ||||||||| ||| ||| |  ||||||| ||  ||||||||||||||| 
Sbjct: 129 tagttttgctatttctaatgatggatttcccctgagattgaaatctgtgagagctactgg 188

                                                                       
Query: 186 taaggaaggtgttaatgatgatggatcagatgatccacttcaggctacgattgaaaagag 245
           |||||| ||||||||   |||||||||||| ||| || ||||  |||| |||||||||||
Sbjct: 189 taaggatggtgttaacagtgatggatcagaggatgcaattcaaactaccattgaaaagag 248

                                                                       
Query: 246 caagaaagtccttgctttgcaaagggacctacttcagcagatttctgaaagaaggaaact 305
            |||||||| |||||| |||||| ||||||||||||||||||| | |||||||||||| |
Sbjct: 249 taagaaagttcttgctatgcaaaaggacctacttcagcagattgccgaaagaaggaaatt 308

                                                                       
Query: 306 agtttcttctataagtagcagcagttttgaccaagaaatagatagaacttcttatgacca 365
            ||||||  |||||  || || | | ||||||||||| | || || ||||| ||||||||
Sbjct: 309 ggtttctgatataaaaagtagtattattgaccaagaactggacagtacttcctatgacca 368

                            
Query: 366 gagggagagctctttgc 382
            |  |||||||||||||
Sbjct: 369 aacagagagctctttgc 385



 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 545 aacaacctaaatctcctaaaacagattcctctgttaagaactctaccaaacag 597
           |||||| | ||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct: 542 aacaacatgaatctcctaaaacagtttcctctattaagaactctaccagacag 594