Jatropha Genome Database

JcCA0296871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0296871.10 + phase: 0 /partial
         (765 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003531 homeobox protein knotted-1, putative                    365   e-100

>29842.m003531 homeobox protein knotted-1, putative
          Length = 1062

 Score =  365 bits (184), Expect = e-100
 Identities = 310/352 (88%)
 Strand = Plus / Plus

                                                                       
Query: 287 gctgttatttcatggacagcaacgatggctctgctgcttctgtcaaggccaagatcatgg 346
           |||||||||||||||||| |||||||| | | ||||||||||||||||| || |||||||
Sbjct: 260 gctgttatttcatggacaacaacgatgccgccgctgcttctgtcaaggctaaaatcatgg 319

                                                                       
Query: 347 ctcatcctcattaccatcgtctcttggctgcttatatcaactgtcaaaaggttggagcac 406
           |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 320 ctcatcctcactaccatcgtctcttggctgcctatatcaactgccaaaaggttggagctc 379

                                                                       
Query: 407 cgcctgaagtggtggctcgactagaagaagcttgtgcttctgcggcagcaatgggcccga 466
           | || ||||| ||  || || |||||||||||||||| ||||| ||| ||||||| |   
Sbjct: 380 caccagaagtagtaactagattagaagaagcttgtgcatctgcagcaacaatggggcaag 439

                                                                       
Query: 467 ctggcacgagctgtgtaggtgaagatccggccctggaccagttcatggaggcttactgtg 526
           |||| ||||||||| ||||||||||||| || || ||||||||||||||||| ||||| |
Sbjct: 440 ctggaacgagctgtataggtgaagatccagcacttgaccagttcatggaggcgtactgcg 499

                                                                       
Query: 527 agatgcttacgaagtatgagcaagagctttcgaagcccttcaaggaagccatgcttttcc 586
           ||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 500 agatgctgactaagtatgagcaagagctttctaagcccttcaaagaagccatgcttttcc 559

                                                               
Query: 587 tccagagggttgagtgtcaattcaaagcccttactgtttcctctccaaattc 638
           | ||||| || ||||| |||||||||||||| |||||| | |||||||||||
Sbjct: 560 tacagagagtggagtgccaattcaaagccctgactgttgcttctccaaattc 611



 Score =  194 bits (98), Expect = 5e-49
 Identities = 216/258 (83%), Gaps = 21/258 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagggtggttccaatagcacttcttgcatgatggcttttggagacaacagtaatgga 60
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1   atggaaggtggttccaatagcacttcttgtatgatggcttttggagacaacagtaatgga 60

                                                                       
Query: 61  ctatgtcct---atgatgatgatgcctctcatga---cttcgcatccccatcatcaccat 114
           |||||||||   ||||||||||||||||||||||   |||| ||||  |||||||| |||
Sbjct: 61  ctatgtcctatgatgatgatgatgcctctcatgacttcttctcatcagcatcatcatcat 120

                                                                       
Query: 115 catcannnnnnnnnnnnnnnnnnnaatgcagactcatcatcaaataccctattccttcct 174
           |||||                   |||||||||| ||||||||| |||||||||||||||
Sbjct: 121 catca------------tcatcctaatgcagacttatcatcaaacaccctattccttcct 168

                                                                       
Query: 175 ctcccacctcccaccaaccatcaagaccaaaaccgtaatagtagtagtgcttcttctatg 234
           |||   |||||||||||| |||||||||| || || |||||||||||||  |||||||||
Sbjct: 169 ctc---cctcccaccaacaatcaagaccagaatcgcaatagtagtagtggctcttctatg 225

                             
Query: 235 attcttgacgatcataac 252
           ||||||||||||||||||
Sbjct: 226 attcttgacgatcataac 243