Jatropha Genome Database

JcCA0296141.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0296141.10 - phase: 1 /pseudo/partial
         (278 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30063.m001418 conserved hypothetical protein                          335   8e-92

>30063.m001418 conserved hypothetical protein
          Length = 912

 Score =  335 bits (169), Expect = 8e-92
 Identities = 245/269 (91%), Gaps = 1/269 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gccttgagggaggatggatgcccgaaagtatgggttgtg-cttctgatcatatgcaacaa 65
           ||||||||||| ||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||
Sbjct: 637 gccttgagggaagatggctgccccaaagtgtgggtcgtgacttctgatcgtatgcaacaa 696

                                                                       
Query: 66  catgctgcacatggagcaggagcctttgtttggagttgcaaggctttggtttctgaaatt 125
           ||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 697 catgcagcacatggagcaggagcttttgtatggagtagcaaggctttggtttctgaaatt 756

                                                                       
Query: 126 aaggcatcacataaggaaatggagaggatgctacaagaacaaaggtagacttcttttcaa 185
           ||||||||||| |||||  |||||| |||||| ||||||||||||   |||||||| |||
Sbjct: 757 aaggcatcacacaaggaggtggagatgatgcttcaagaacaaaggcccacttctttccaa 816

                                                                       
Query: 186 ggtagattgttaaagcacaatcttgattctgaagttgtagatgctctcaaggatttgagg 245
           || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 817 ggcagattgttaaagcacaatctagattctgaagttgtagatgctctcaaggatctgagg 876

                                        
Query: 246 aataagctagctgagaacgagtcaaaaag 274
           ||||||||||||||||| |||||||||||
Sbjct: 877 aataagctagctgagaatgagtcaaaaag 905