Jatropha Genome Database

JcCA0294381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0294381.10 + phase: 0 /partial
         (329 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001444 transcription factor, putative                          202   9e-52

>29830.m001444 transcription factor, putative
          Length = 672

 Score =  202 bits (102), Expect = 9e-52
 Identities = 174/198 (87%)
 Strand = Plus / Plus

                                                                       
Query: 130 agaaatcccaagctgaaatcaatcccaacactggccaatgatctccaattaatttttaag 189
           ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 7   agaaaccccaagctgaaatcaattccaacactggccaatgatctccaattaattttcaag 66

                                                                       
Query: 190 ctgagcagcagaacagcagacggagagtcattgcaatttttatcaaagggaaaatgcgaa 249
            ||||| ||||||||||||| | |||||||||||||||||| |   ||||||||||| ||
Sbjct: 67  ttgagctgcagaacagcagatgaagagtcattgcaatttttcttccagggaaaatgcaaa 126

                                                                       
Query: 250 agggcaagaggtgattgctgccaatctaagaaaagtctgcctgtattggatcaggatctc 309
           || |  ||||| |||||||  || ||||||| |||||||||||| || ||||||||||| 
Sbjct: 127 agagacagaggagattgctatcagtctaagagaagtctgcctgtgttagatcaggatcta 186

                             
Query: 310 aactgtcttccttattca 327
           ||||| ||||||||||||
Sbjct: 187 aactgccttccttattca 204