Jatropha Genome Database
- JcCA0293441.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0293441.20 - phase: 0 /TE/partial
(1107 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28320.m001110 dead box ATP-dependent RNA helicase, putative 535 e-151
27574.m000220 dead box ATP-dependent RNA helicase, putative 105 6e-22
29835.m000634 dead box ATP-dependent RNA helicase, putative 60 3e-08
29748.m000379 dead box ATP-dependent RNA helicase, putative 56 5e-07
>28320.m001110 dead box ATP-dependent RNA helicase, putative
Length = 1815
Score = 535 bits (270), Expect = e-151
Identities = 459/522 (87%)
Strand = Plus / Plus
Query: 1 tttcgcaatttggagaagggtgttgacatcttagttgcaactcctggtcgcttagttgat 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 796 tttcgcaatttggagaagggtgttgacatattagttgcaactcctggtcgcttagttgac 855
Query: 61 atgattgaaagaggaagagtttcacttggaatggtaaagtatctggctcttgatgaggct 120
|||||||| ||||||||||| || ||||||||||| |||||| |||| | || || |||
Sbjct: 856 atgattgagagaggaagagtctctcttggaatggtgaagtatttggccttggacgaagct 915
Query: 121 gacagaatgcttgatatgggatttgaacctcagattcggaagattgtccagcaaatggac 180
|| || |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 916 gataggatgcttgatatgggatttgaacctcagattaggaagattgttcagcaaatggac 975
Query: 181 atgcctccgccaggtgaaaggcaaactatgctttttagtgcaacttttccgcatgagata 240
|||||||| ||||||||||||||||| |||||||| ||||| |||||||| | |||||||
Sbjct: 976 atgcctccaccaggtgaaaggcaaaccatgcttttcagtgctacttttccacttgagata 1035
Query: 241 cagagtcttgcgtctgattttctttcagattatatttttcttactgttggaagagttgga 300
||||| ||||| ||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 1036 cagagacttgcatctgattttctttcagactacatttttcttactgtggggagagttggt 1095
Query: 301 tcaagtactgatttgattgcacaaagggttgaacttgttcaagatgttgacaaaagaaac 360
||||| ||||| |||||||| ||||| || ||||||||||| ||| | |||||||||| |
Sbjct: 1096 tcaagcactgacttgattgcccaaagagtggaacttgttcaggatatggacaaaagaagc 1155
Query: 361 caccttatggagcttcttcatgcccaaaaggctagtggcaaccatggcaagcgtgctcta 420
| |||||||| |||||| || |||||||| ||| | ||||| ||||||||| ||
Sbjct: 1156 cgccttatggttcttcttagtgatcaaaaggcacttggaagtcatggaaagcgtgcttta 1215
Query: 421 acactagtatttgtggagacaaagagaggagcagatgccttggagcactggttgtccagg 480
|||||||| ||||||||||||||||||||||| |||||||| || ||||||||||| | |
Sbjct: 1216 acactagtttttgtggagacaaagagaggagctgatgccttagaacactggttgtctatg 1275
Query: 481 agtgggtttcctgcaatagcaatacatggtgacaaagtgcaa 522
| ||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 1276 aatggttttccagcaatagcgatacatggtgacaaagtgcaa 1317
Score = 145 bits (73), Expect = 7e-34
Identities = 136/157 (86%)
Strand = Plus / Plus
Query: 676 ataggccgaacaggacgtgctggtaaatctggattggccactgcatttttcagtgacaag 735
||||||||||||||||| |||||||| |||||| |||| |||||||| ||||| |||||
Sbjct: 1339 ataggccgaacaggacgagctggtaagtctggagtggcaactgcattcttcagcgacaaa 1398
Query: 736 aacattccgcttgcaaaggcacttgttgaactaatgaaagaagtaaatcaggaggttcct 795
||||| | |||||||||| |||||||||||||||||| || | | | ||||||||||||
Sbjct: 1399 aacatgtcacttgcaaagggacttgttgaactaatgaaggaggcacagcaggaggttcct 1458
Query: 796 tcttggcttagtcaatatgctgaaaattcatcttatg 832
|||||||| | || |||||||| |||||||||||||
Sbjct: 1459 tcttggctcaaccagtatgctgataattcatcttatg 1495
>27574.m000220 dead box ATP-dependent RNA helicase, putative
Length = 2019
Score = 105 bits (53), Expect = 6e-22
Identities = 221/277 (79%)
Strand = Plus / Plus
Query: 104 tggctcttgatgaggctgacagaatgcttgatatgggatttgaacctcagattcggaaga 163
|||| ||||||||||| || || |||||||| ||||| ||||| ||||||||| | ||||
Sbjct: 1112 tggcacttgatgaggcagataggatgcttgacatgggctttgagcctcagattagaaaga 1171
Query: 164 ttgtccagcaaatggacatgcctccgccaggtgaaaggcaaactatgctttttagtgcaa 223
| || | |||||||||||||| || || || || || || ||||| || ||||| |
Sbjct: 1172 tagttgaacaaatggacatgccccctcctggcaggagacagacaatgctgttcagtgcca 1231
Query: 224 cttttccgcatgagatacagagtcttgcgtctgattttctttcagattatatttttctta 283
||||||| | || |||||||| ||||| |||||||||||| || ||| |||||| |
Sbjct: 1232 cttttccaaaagaaatacagagacttgcatctgattttcttgcaagttacatttttttgg 1291
Query: 284 ctgttggaagagttggatcaagtactgatttgattgcacaaagggttgaacttgttcaag 343
|||||||||| ||||| || ||||| |||||||||| ||||| |||||| ||||||| |
Sbjct: 1292 ctgttggaagggttggttctagtacggatttgattgttcaaagagttgaatttgttcatg 1351
Query: 344 atgttgacaaaagaaaccaccttatggagcttcttca 380
| |||||| |||| ||| || ||||| ||||||||
Sbjct: 1352 agactgacaagagaagccatctaatggaccttcttca 1388
>29835.m000634 dead box ATP-dependent RNA helicase, putative
Length = 1953
Score = 60.0 bits (30), Expect = 3e-08
Identities = 129/162 (79%)
Strand = Plus / Plus
Query: 284 ctgttggaagagttggatcaagtactgatttgattgcacaaagggttgaacttgttcaag 343
|||||||| |||| || ||||||||||||||||| ||||| |||||| ||||||| |
Sbjct: 1220 ctgttggacgagtgggctcaagtactgatttgatcattcaaagagttgaatttgttcagg 1279
Query: 344 atgttgacaaaagaaaccaccttatggagcttcttcatgcccaaaaggctagtggcaacc 403
| ||||||||||| ||||| ||||| |||||||| || || | ||| | |||| ||
Sbjct: 1280 agtctgacaaaagaagtcacctcatggaccttcttcacgcacagagggcaaatggcgtcc 1339
Query: 404 atggcaagcgtgctctaacactagtatttgtggagacaaaga 445
| ||||||| || |||| |||| ||||||||||||||||
Sbjct: 1340 agggcaagcaagcattaactttagtttttgtggagacaaaga 1381
>29748.m000379 dead box ATP-dependent RNA helicase, putative
Length = 2871
Score = 56.0 bits (28), Expect = 5e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 109 cttgatgaggctgacagaatgcttgatatgggatttgaacctca 152
|||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 1918 cttgatgaggctgatcggatgcttgatatgggttttgaacctca 1961