Jatropha Genome Database

JcCA0293441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0293441.10 - phase: 0 /pseudo/partial
         (210 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001111 conserved hypothetical protein                          159   8e-39
29848.m004648 conserved hypothetical protein                          113   4e-25

>28320.m001111 conserved hypothetical protein
          Length = 393

 Score =  159 bits (80), Expect = 8e-39
 Identities = 116/128 (90%)
 Strand = Plus / Plus

                                                                       
Query: 45  aggagatttacacaagaaaaatcgtattcaagtctccaacaccaagaagcccttattctt 104
           ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 42  aggagatctacacaagaaaaatcgtattcaagtctccaacaccaaaaagcccttgttttt 101

                                                                       
Query: 105 ctacgttaacctcgccaagagatatatgcagcaacacaacgaggtggaactgtctgcact 164
           ||| || || ||||||||||| ||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 102 ctatgtcaatctcgccaagaggtatatgcagcagcacaatgaggtggagctgtctgctct 161

                   
Query: 165 tggaatgg 172
           ||||||||
Sbjct: 162 tggaatgg 169


>29848.m004648 conserved hypothetical protein
          Length = 387

 Score =  113 bits (57), Expect = 4e-25
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                       
Query: 56  acaagaaaaatcgtattcaagtctccaacaccaagaagcccttattcttctacgttaacc 115
           |||||||||| || || |||||||| || || ||||||||| | || |||||||| || |
Sbjct: 53  acaagaaaaaccgcatccaagtctctaatacgaagaagcccctctttttctacgtcaatc 112

                                                                    
Query: 116 tcgccaagagatatatgcagcaacacaacgaggtggaactgtctgcacttggaatgg 172
           ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||
Sbjct: 113 tcgccaagagatacatgcagcaacacaatgaagttgaactgtctgcacttggaatgg 169