Jatropha Genome Database

JcCA0291961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0291961.10 - phase: 0 /partial
         (476 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30008.m000800 hypothetical protein                                    147   7e-35

>30008.m000800 hypothetical protein
          Length = 1419

 Score =  147 bits (74), Expect = 7e-35
 Identities = 334/420 (79%), Gaps = 3/420 (0%)
 Strand = Plus / Plus

                                                                       
Query: 22  ccatttcaattgttggagctaaatgtgatttccggccaagacctagcccaagtgtcacgt 81
           |||||||| ||||| |||||||||||||| || || |||||||| |||||||||||||||
Sbjct: 25  ccatttcagttgttagagctaaatgtgatatctggacaagaccttgcccaagtgtcacgt 84

                                                                       
Query: 82  aagatgcgaacctacgccgttgcatgggtgcaccctgagcgcaaactttctactagactc 141
           |||||||||||||| || ||||| ||||||||||||||  | || ||||| || ||| | 
Sbjct: 85  aagatgcgaacctatgcggttgcgtgggtgcaccctgacaggaagctttcgacaagagta 144

                                                                       
Query: 142 gacatttatagccataacaatcctacatggaatgataagtttgtattccgtgtagacgat 201
           |||    |  | |||||||| ||||| ||||| ||||| ||||| || || || ||||||
Sbjct: 145 gacgcccaagggcataacaaccctacctggaacgataaatttgtttttcgggttgacgat 204

                                                                       
Query: 202 gagtttttgtatcgtgagacctcagctataatggtggagatttacgccgtcagttggttc 261
           |||||| ||||| | || || || || |||||| | ||||| || ||  |   |||||||
Sbjct: 205 gagtttctgtatggcgaaacatctgccataatgattgagatctatgctttacattggttc 264

                                                                       
Query: 262 cgcgatatacacgttggcaccgtccgtgttatcgtcggaaacctcattcctccggctgag 321
           |||||| | || || || |||||||||||||| || ||||| || |||||||| ||  | 
Sbjct: 265 cgcgatgtccatgtaggaaccgtccgtgttattgttggaaatctaattcctccagcgcaa 324

                                                                       
Query: 322 cataaaa---aacaccaaaagcatggcgttcagctcggcatgcgattcgttgcacttcaa 378
           | | | |   |||| ||| |||||  ||||||||| || ||||| ||||| || ||||| 
Sbjct: 325 ctttacaggcaacatcaacagcatcacgttcagcttgggatgcgcttcgtggcccttcag 384

                                                                       
Query: 379 gttcgtcgccgctctggccgccctcaagggattctcaatattggtgtggcctttcttgat 438
           ||||| ||||  ||||| || ||||||||||||||||| |||||||| ||  ||||||||
Sbjct: 385 gttcgccgccattctgggcgtcctcaagggattctcaacattggtgtagcacttcttgat 444