Jatropha Genome Database
- JcCA0290151.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0290151.10 - phase: 2 /partial
(988 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29780.m001361 zinc finger protein, putative 131 9e-30
29794.m003304 nucleic acid binding protein, putative 56 4e-07
28694.m000662 nucleic acid binding protein, putative 54 2e-06
>29780.m001361 zinc finger protein, putative
Length = 1716
Score = 131 bits (66), Expect = 9e-30
Identities = 234/289 (80%), Gaps = 12/289 (4%)
Strand = Plus / Plus
Query: 699 aaaaccaactccaaggtctaatgaattctcttgctaatggaggctcttccattttcggag 758
|||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1430 aaaaccaactccaaggattgatgaattctcttgctaatgggggctcttccatttttggag 1489
Query: 759 gcggacatggccatgatgacagctttggtggattcgc---cggtgggatatcattagaac 815
||||||| || || ||| || |||||||||| || | | |||| |||||||| ||||
Sbjct: 1490 gcggacacgggcaggataacggctttggtgggtttacaagcagtggaatatcattggaac 1549
Query: 816 agcctcataatagtgggaatttcagtaatgtagaagatgctaagttgcataagctgactt 875
||||||||||||| || ||| || |||||||| || || | |||| |||||||
Sbjct: 1550 agcctcataatagcacgagttttagcaatgtagatgaggcaa------ataaactgactt 1603
Query: 876 tggactttttgggtgttggagggatggtaaggaacattggtggagggcaccatgggatca 935
|||| ||| | |||||||| || |||||||| ||||| |||||| || ||||| ||||
Sbjct: 1604 tggattttctaggtgttggtggtatggtaagaaacat---tggaggtcaacatggtatca 1660
Query: 936 ctttaagctctttggatacagaaataaagtcggcacaaggtaataaacc 984
|||||| | ||||| |||||||||||||| ||||||| ||||||||
Sbjct: 1661 atttaagtgccttggacacagaaataaagtcagcacaagcaaataaacc 1709
Score = 121 bits (61), Expect = 8e-27
Identities = 115/133 (86%)
Strand = Plus / Plus
Query: 482 tctctttatagtaactcaatgcagcaagaaaatatcaccccacacatgtctgcaactgca 541
||||||||||| || |||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1168 tctctttatagcaattcaatgcaacaagagaacatcactccccacatgtctgcaactgct 1227
Query: 542 ttgcttcaaaaagctgctcaaatgggttcaacaagtagcccaaacaataattctactctg 601
||||| |||||||||||||||||||||||||| | ||| || || ||||||||| ||
Sbjct: 1228 ttgctccaaaaagctgctcaaatgggttcaactacaagcagcaataacaattctactttg 1287
Query: 602 ctaagaggcctag 614
|||||||||||||
Sbjct: 1288 ctaagaggcctag 1300
Score = 56.0 bits (28), Expect = 4e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 23 tatggaaataatcatatgagtttaggcttgtctcaagtgggttc 66
|||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 676 tatggaaataatcacatgagcttaggcttatctcaagttggttc 719
>29794.m003304 nucleic acid binding protein, putative
Length = 1341
Score = 56.0 bits (28), Expect = 4e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 524 cacatgtctgcaactgcattgcttcaaaaagctgctcaaatggg 567
||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 826 cacatgtctgctactgcattgctgcaaaaagcagcacaaatggg 869
>28694.m000662 nucleic acid binding protein, putative
Length = 1659
Score = 54.0 bits (27), Expect = 2e-06
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 519 ccccacacatgtctgcaactgcattgcttcaaaaagctgctcaaatgggttcaac 573
||||||| ||||| || ||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 1061 ccccacatatgtcagctactgcattgctgcaaaaagccgctcagatgggtgcaac 1115