Jatropha Genome Database

JcCA0289481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0289481.10 + phase: 0 
         (483 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002985 gibberellin 20-oxidase, putative                        161   5e-39
54630.m000011 conserved hypothetical protein                          115   2e-25

>29904.m002985 gibberellin 20-oxidase, putative
          Length = 519

 Score =  161 bits (81), Expect = 5e-39
 Identities = 291/361 (80%)
 Strand = Plus / Plus

                                                                       
Query: 41  cttatttatcagaatcatcaggacttattcgtgtttatcggtatcctccatgttctattg 100
           ||||||||||||||||  ||||| || | || ||||||||||| |||| ||| || |  |
Sbjct: 41  cttatttatcagaatcgacaggaattgtacgcgtttatcggtaccctcaatgctccacag 100

                                                                       
Query: 101 ctgatgagacattggggatggaagctcatacagatagttctgtgctttctatactgaatc 160
           || |||| ||| |||| |||||||||||||| || ||||| || ||||||||| | || |
Sbjct: 101 ctaatgaaacactgggcatggaagctcatacggacagttcagtactttctatattaaacc 160

                                                                       
Query: 161 aagatcaaggagaaggacttgaacttctcaaggatgataaatggctccacatagacccta 220
             || |||| ||  ||||| |||||| ||||||||||||| ||||| |   |||| ||||
Sbjct: 161 cggaacaagtaggcggactcgaacttttcaaggatgataagtggctgccagtagagccta 220

                                                                       
Query: 221 ttcctagcacactaattctcaaccttggagacatgatgcaggccattagcaatgatgagt 280
           |||||   ||||| ||||||||| ||||||| ||||||||||| || ||| |||| || |
Sbjct: 221 ttcctgatacactgattctcaacattggagatatgatgcaggcgataagcgatgacgaat 280

                                                                       
Query: 281 acaaaagcgttacgcacagagttaagacaaacaaagatacggagagattctcaatctgct 340
           |||| |||||    || |||||||||||||||||||||   |||||| | || |||||||
Sbjct: 281 acaagagcgtagtacatagagttaagacaaacaaagatgaagagagactgtcgatctgct 340

                                                                       
Query: 341 actttgtatttccgggtgaagggagtgtgattcaaagttcaaggtataagcctttcactt 400
           |||| ||||| || | || ||||||||||||| |||| |||| ||| |||||||| ||||
Sbjct: 341 acttcgtattcccagctgcagggagtgtgattgaaagctcaaagtacaagccttttactt 400

            
Query: 401 a 401
           |
Sbjct: 401 a 401


>54630.m000011 conserved hypothetical protein
          Length = 240

 Score =  115 bits (58), Expect = 2e-25
 Identities = 166/202 (82%)
 Strand = Plus / Plus

                                                                       
Query: 272 atgatgagtacaaaagcgttacgcacagagttaagacaaacaaagatacggagagattct 331
           ||||||| ||||| || |||| |||||||||| || |||||||||||   || ||||| |
Sbjct: 11  atgatgaatacaagagtgttatgcacagagttcaggcaaacaaagatgaagacagattgt 70

                                                                       
Query: 332 caatctgctactttgtatttccgggtgaagggagtgtgattcaaagttcaaggtataagc 391
           |||||||||| || || || || | || |||||||||||||||||| |||| ||| ||||
Sbjct: 71  caatctgctatttcgttttcccagctgcagggagtgtgattcaaagctcaaagtacaagc 130

                                                                       
Query: 392 ctttcacttacagtgatttccaagcacaagttcagcaagacataaagactataggatgta 451
           |||| || ||||  |||||||||| ||| || |||||||| || |||||| | |||| ||
Sbjct: 131 cttttacatacaaagatttccaagaacaggtgcagcaagatatcaagactgttggattta 190

                                 
Query: 452 agattgggcttgataggttcaa 473
           || |||||||||| | ||||||
Sbjct: 191 aggttgggcttgagaagttcaa 212