Jatropha Genome Database

JcCA0288061.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0288061.20 + phase: 0 
         (630 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29772.m000311 conserved hypothetical protein                          351   3e-96

>29772.m000311 conserved hypothetical protein
          Length = 711

 Score =  351 bits (177), Expect = 3e-96
 Identities = 276/309 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtttggaatgtcttatggcgaaatctttcttttgcttggagccaccgctgcactaatc 60
           ||||||||||| |||||||| ||| | || ||  | |||||||||||||||||| |||||
Sbjct: 1   atgtttggaatttcttatggagaattgttcctcctccttggagccaccgctgcattaatc 60

                                                                       
Query: 61  ggacccaaggatctaccagtaatagcaagaacagctgggagattagccggtcgagctatt 120
           ||| | |||||| ||||| ||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 61  ggatcaaaggatttaccaataatatccagaacagctgggagattagcaggtcgagctatt 120

                                                                       
Query: 121 ggctatgtccagttagctcgtggccaattcgagagtgttatgcagcaatctcaagctcgc 180
           |||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 121 ggctatgtccagttggctcgtggccaattagagaatgttatgcagcaatctcaagctcgc 180

                                                                       
Query: 181 caggttcacaaggaacttcaggacacaatggctcaacttgaagccatacgtcatgagatt 240
           ||||| || |||||||| || || ||||||||||| ||||||||||| |||||||| |||
Sbjct: 181 caggtccataaggaactccaagatacaatggctcagcttgaagccattcgtcatgaaatt 240

                                                                       
Query: 241 cgaagcatatctatcttgagtcctggtccattaactcggaggcttgttgacaatgttgat 300
           |||||| | |||||||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 241 cgaagcgtttctatcttgaatcctggtccattaactcggaggcttgttgataatattgat 300

                    
Query: 301 aatacatct 309
            ||||||||
Sbjct: 301 catacatct 309



 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 522 tggtgcagatgcagaaaagttgattgatgatgctgggcttccaaatgttctacctgtatc 581
           |||| ||||||||| | |||| |||||||||||  | |||| ||||||||| ||  | ||
Sbjct: 507 tggtacagatgcaggagagttaattgatgatgccagtcttctaaatgttctgcccttgtc 566

                                      
Query: 582 tgctgaaagtgctgggatgttaccaaa 608
           |||||||||| |||||||| |||||||
Sbjct: 567 tgctgaaagtactgggatgctaccaaa 593