Jatropha Genome Database

JcCA0287841.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0287841.10 - phase: 0 /pseudo/partial
         (1228 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006314 Casbene synthase, chloroplast precursor, putative        72   9e-12
29910.m000944 Terpinolene synthase, chloroplast precursor, putative    72   9e-12

>30169.m006314 Casbene synthase, chloroplast precursor, putative
          Length = 1668

 Score = 71.9 bits (36), Expect = 9e-12
 Identities = 111/136 (81%)
 Strand = Plus / Plus

                                                                       
Query: 374 cttgcgatgtgttcaacaaattcaaggacaaggatggaaatttccagaaagctatcagta 433
           ||||||||||||| || ||||||||| |||  |||||||| ||| |||||   ||    |
Sbjct: 365 cttgcgatgtgtttaataaattcaagaacagtgatggaaagttcaagaaaagcattgcca 424

                                                                       
Query: 434 atgatgtgaagggcattctcagcttatatgaagcaagttctgtaagtgtgcacggagaag 493
           ||||  |||| ||| |||| |||||||| ||||| |||| | |||||||||| |||||| 
Sbjct: 425 atgacctgaaaggccttcttagcttatacgaagcgagttttctaagtgtgcatggagaaa 484

                           
Query: 494 atattctagatgaagc 509
           ||||||||||||||||
Sbjct: 485 atattctagatgaagc 500



 Score = 52.0 bits (26), Expect = 8e-06
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                        
Query: 965  atgcatttgagaggtgcaacattagtgcaattgatcaactcccagattacatgaaagatc 1024
            |||||||| | |||||| |||||  ||| |||||| |||| |||||||||||||||| ||
Sbjct: 977  atgcatttcaaaggtgcgacattgatgctattgatgaactaccagattacatgaaagttc 1036

                  
Query: 1025 tctaca 1030
            | ||||
Sbjct: 1037 tttaca 1042


>29910.m000944 Terpinolene synthase, chloroplast precursor, putative
          Length = 1431

 Score = 71.9 bits (36), Expect = 9e-12
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                           
Query: 476 taagtgtgcacggagaagatattctagatgaagctcttgcttttacaa 523
           |||||||||| |||||||||||| |||||||||| |||||||||||||
Sbjct: 377 taagtgtgcatggagaagatattttagatgaagcacttgcttttacaa 424