Jatropha Genome Database

JcCA0286251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0286251.10 + phase: 0 /partial
         (942 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005469 RING-H2 finger protein ATL4J precursor, putative        100   3e-20
29794.m003416 ring finger protein, putative                            62   6e-09

>29912.m005469 RING-H2 finger protein ATL4J precursor, putative
          Length = 804

 Score = 99.6 bits (50), Expect = 3e-20
 Identities = 131/158 (82%)
 Strand = Plus / Plus

                                                                       
Query: 380 tgcataagttcaatcacaagattattgtttctgattttgtgctcaagaatagatggagta 439
           |||| ||||||||||||||||||||| | || ||| |||| |||||||| ||||||||||
Sbjct: 242 tgcacaagttcaatcacaagattattatatcagatgttgttctcaagaacagatggagta 301

                                                                       
Query: 440 gcgtttcttcttctgatttaatgttcttgaactcagaaatgcttcaagatttttcaagca 499
             ||   |||||||||| | |||||||||||  | || |||||||| ||| | || ||||
Sbjct: 302 atgtgagttcttctgatcttatgttcttgaatgcggagatgcttcaggatatgtcgagca 361

                                                 
Query: 500 atagattttcttctttggatttgaataatgagcaattc 537
           | ||||| ||||||| |||||  |||||||||||||||
Sbjct: 362 acagattctcttcttcggattctaataatgagcaattc 399



 Score = 73.8 bits (37), Expect = 2e-12
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 80  atgcttttcatattaactgtgttgatcaatggcttgaaaaacattcaagttgccctcttt 139
           |||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 1   atgcctttcatattaactgtgtcgatcagtggcttgaaaaacattctagctgcccacttt 60

            
Query: 140 g 140
           |
Sbjct: 61  g 61



 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 583 aagattaaagaagaaatggagatcaagagattgtttgaaagcaag 627
           ||||||||||||||||||||||  || ||||||||||||||||||
Sbjct: 427 aagattaaagaagaaatggagaagaaaagattgtttgaaagcaag 471


>29794.m003416 ring finger protein, putative
          Length = 1224

 Score = 61.9 bits (31), Expect = 6e-09
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 380 tgcataagttcaatcacaagattattgtttctgattttgtgctcaagaatagatggagt 438
           ||||||| ||||| ||||||||||||||||||||| || |  ||||||| |||||||||
Sbjct: 686 tgcataaattcaagcacaagattattgtttctgatgttattatcaagaacagatggagt 744