Jatropha Genome Database

JcCA0286161.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0286161.20 - phase: 0 /pseudo/partial
         (333 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008758 protein binding protein, putative                       196   6e-50

>30128.m008758 protein binding protein, putative
          Length = 831

 Score =  196 bits (99), Expect = 6e-50
 Identities = 153/171 (89%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttgagcaacatagttaatgtatcgcgatattggaagtcccgaaagtatctttagcctaat 68
           |||||||| ||||||||||||| |||||| ||||||||||| || |||||| |||| |||
Sbjct: 364 ttgagcaagatagttaatgtattgcgatactggaagtcccgtaaatatcttcagccaaat 423

                                                                       
Query: 69  cagtggcttcaaagttggttgaaaagagaaattcaagctcttttgcaggaagagaatgtt 128
           | |||||| ||  ||||||||| ||||||||||||||||||||||||||||||  |||||
Sbjct: 424 cggtggctgcagcgttggttgagaagagaaattcaagctcttttgcaggaagaagatgtt 483

                                                              
Query: 129 gacattattgtacatcatattcttggtgtggttgattcattcctgaaaagg 179
           || |||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 484 gagattattctacatcatattcttggtgttgttgattcattccagaaaagg 534



 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 123/152 (80%)
 Strand = Plus / Plus

                                                                       
Query: 181 ttcaatattgaagcttacgatgatgtttacacacagcagctgggttggaacaatcctgga 240
           ||||| |||||||| || ||||| |||||||  |||||  | |||||||||  ||||  |
Sbjct: 676 ttcaacattgaagcctatgatgaagtttacatgcagcaattaggttggaacgctcctaca 735

                                                                       
Query: 241 gcgactggtgagtctgcagatgtagaacctagtgtagccataccagcagtcccatacttg 300
           | |||||||||| |||| ||||  |||||||||| |   | ||| | | |||||||||||
Sbjct: 736 gtgactggtgaggctgcggatgcggaacctagtgaacagagacctgtaatcccatacttg 795

                                           
Query: 301 tatagctttgatgatgactctgatgaaactga 332
           || | ||| |||||||||||||||||||||||
Sbjct: 796 tacatcttcgatgatgactctgatgaaactga 827