Jatropha Genome Database

JcCA0285981.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0285981.30 + phase: 0 /pseudo/partial
         (664 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29933.m001418 Anaphase-promoting complex subunit, putative            486   e-137

>29933.m001418 Anaphase-promoting complex subunit, putative
          Length = 2292

 Score =  486 bits (245), Expect = e-137
 Identities = 511/597 (85%), Gaps = 2/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaaactgacgaggagcaaccagtgcttccatttcagcttcaattcgacaaacccgta 60
           |||||||| || || ||||| | |||||||||||||||||||||||| |||||||| || 
Sbjct: 1   atggaaaccgatgacgagcagcgagtgcttccatttcagcttcaatttgacaaaccagtc 60

                                                                       
Query: 61  gcctctcagattaaaattgctgagtggaacccagagaaggatttattagcaatggtgaca 120
           |||||||||||||||||||| || ||||| ||||||||||| ||| | || ||||| || 
Sbjct: 61  gcctctcagattaaaattgcggaatggaatccagagaaggacttactggctatggtaact 120

                                                                       
Query: 121 gaggattcaaaggttttgctccatcgcttcaattggcagaggttatggaccatctcccct 180
           |||||||| ||| |||| |||||||| |||||||||||| | |||||||| || ||||||
Sbjct: 121 gaggattctaagattttactccatcgtttcaattggcagcgcttatggactatttcccct 180

                                                                       
Query: 181 ggaaagtgcattacatcattatgctggcgtcctgatggtaaggcgatagccgttggactt 240
           |||   ||||| ||||| || ||||||| |||||||||||| || ||||| |||||||||
Sbjct: 181 ggaggttgcatcacatcgttgtgctggcatcctgatggtaaagcaatagctgttggactt 240

                                                                       
Query: 241 gaagatggaaccatttccttgcatgatgtcgagaatgggaagttattgaggagcttgaaa 300
           ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||  
Sbjct: 241 gaagatggaaccatttccttgcatgatgttgagaatgggaaattattgagaagcttgagg 300

                                                                       
Query: 301 tctcatactgttgcagttgtgtgtcttaactgggaggaggatggacaact-aaaaaggat 359
           |||||||||||||| ||||||||||||||||||||||| ||||||| | | || || || 
Sbjct: 301 tctcatactgttgcggttgtgtgtcttaactgggaggaagatggactagtgaataaaga- 359

                                                                       
Query: 360 tgattgttgtaacttctcaacatatgaagaccgtactcctcgtttcttccctcctgctcc 419
           |||||  ||||||| ||  ||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 360 tgatttgtgtaactacttgacatatgaagatcgcacttctcgtttcttccctcctgctcc 419

                                                                       
Query: 420 aaggccacctaggatgcctggtgtggtgtctggggatgccggtttcatggatgacaacga 479
           || ||| ||| |||||||||||||||| ||||| ||| | ||||||||||||| ||  ||
Sbjct: 420 aaagccccctcggatgcctggtgtggtatctggagatactggtttcatggatggcagtga 479

                                                                       
Query: 480 agattcataccaagagttgtcaaattcttcataccagcaatttaatattttatgtagcgc 539
           |||||| || |||||||| |||| |||||| ||||| |  ||||||||| | || || ||
Sbjct: 480 agattcttatcaagagttatcaagttcttcttaccaacgctttaatattctgtgcagtgc 539

                                                                    
Query: 540 tgacagagatggaagcatttgctttagtattttcggaatatttcccataggaaaaat 596
            |||| ||||||||| |||||||||||||| || ||||| ||||| |||||| ||||
Sbjct: 540 agacaaagatggaagtatttgctttagtatatttggaatttttccaataggacaaat 596