Jatropha Genome Database

JcCA0284281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0284281.10 + phase: 0 /partial
         (469 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29726.m003891 lipoxygenase, putative                                  163   1e-39
30128.m008781 lipoxygenase, putative                                   54   8e-07

>29726.m003891 lipoxygenase, putative
          Length = 2607

 Score =  163 bits (82), Expect = 1e-39
 Identities = 296/370 (80%)
 Strand = Plus / Plus

                                                                       
Query: 100 agattcaaaatcaaagggaaagtagtgttgatgaagaagaacgttttggacttcaatgat 159
           ||||| || |||||||| | ||| || ||||||||||| || ||| | ||||||| ||| 
Sbjct: 58  agatttaagatcaaaggaacagtggttttgatgaagaaaaatgttctcgacttcagtgac 117

                                                                       
Query: 160 gttacagcttcatgttttgatcggattcatgagttgtttggcaaaggtgtctctatccaa 219
            ||| |||||||| | |||||||  ||||||||||| | || |||||||| ||||| || 
Sbjct: 118 attaaagcttcatttcttgatcgagttcatgagttgctggggaaaggtgtttctatgcag 177

                                                                       
Query: 220 cttatcagtgccgtcaatccagacccagagaatgatctgcgagggaagcatggaaaggta 279
           ||||| ||||||||  |||  ||||||| |||  | ||||||||||||| |||||| || 
Sbjct: 178 cttattagtgccgtacatcatgacccagcgaacaagctgcgagggaagcttggaaaagtg 237

                                                                       
Query: 280 gcattcttggagagctgggtnnnnnnnntaacaccgatggcagctcaagagacagaattc 339
           || | ||||||||  |||||        | || || ||  | |||   || ||||  |||
Sbjct: 238 gcttacttggagaaatgggtgagaagtattactccaataaccgctgtggatacagttttc 297

                                                                       
Query: 340 aatattacttttgactgggatgaaagcatggctgttccaggagctttcataattagaaat 399
           || || ||||||||||||||||| |||||||  ||||| |||||||| ||||||||||||
Sbjct: 298 aacatcacttttgactgggatgagagcatgggagttcctggagcttttataattagaaat 357

                                                                       
Query: 400 caccatcatagccagctatacctcaagacagtcacattagaagatgttcctggacatggt 459
           || |||||||||||| |||||||||| ||||| || ||||| ||||||||||| ||||||
Sbjct: 358 catcatcatagccagttatacctcaaaacagtaactttagatgatgttcctgggcatggt 417

                     
Query: 460 agggtacatt 469
           ||||||||||
Sbjct: 418 agggtacatt 427


>30128.m008781 lipoxygenase, putative
          Length = 2616

 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 124 gtgttgatgaagaagaacgttttggacttcaatga 158
           ||||||||||||||||| ||||||||||| |||||
Sbjct: 100 gtgttgatgaagaagaatgttttggactttaatga 134