Jatropha Genome Database

JcCA0283211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0283211.10 + phase: 0 /pseudo/partial
         (813 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          375   e-103

>27810.m000636 conserved hypothetical protein
          Length = 3165

 Score =  375 bits (189), Expect = e-103
 Identities = 333/381 (87%)
 Strand = Plus / Plus

                                                                        
Query: 47   gagatgtcaacaattttgatgactgtgttgctgcattccttctacagagggcatttaata 106
            |||||||||||| |  |||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 2156 gagatgtcaacattgctgatgactgcattgctgcattccttctacagagggcatttaata 2215

                                                                        
Query: 107  tgtatgaatttgaagatgtacgaaaacttgctgctgagctttgtggccgcattcatccac 166
             ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2216 agtatgaatttgaagatgtacgaaaacttgctgctgagctctgtggccgccttcatccac 2275

                                                                        
Query: 167  aggtgctctttcccattgtttcctccctattagaagatgctgctaaatgcgaagatgttc 226
            |||||||||||||  ||||||   || |||||||| ||||||| || |   | ||| | |
Sbjct: 2276 aggtgctctttcctgttgttttgaccatattagaaaatgctgcaaattttcacgatatac 2335

                                                                        
Query: 227  tgataataaaagcttgtctttttgccatttgcacttcgcttgtggttaggggaagggagt 286
            |||  |||||||||||||| || ||||||||||||||||| |||||||  || | ||| |
Sbjct: 2336 tgaagataaaagcttgtctgttcgccatttgcacttcgctcgtggttaaaggcaaggatt 2395

                                                                        
Query: 287  cagtttctcatcctattattatccaaatcagaaaaacaatagaaacagttctgctctggc 346
            |||||| ||||||| ||||| | ||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 2396 cagtttatcatcctgttatttttcaaattagaaaaacaatagaagcagtactgctgtggc 2455

                                                                        
Query: 347  cgtctttagatggggatgaagtttccaaagcacaacacggatgcattgactgcctggcac 406
            ||||||||||||||||||||||||| |||||||| || |||||||| |||||| | ||||
Sbjct: 2456 cgtctttagatggggatgaagtttcaaaagcacagcatggatgcatcgactgcttagcac 2515

                                 
Query: 407  tgatgatatgtgctgaactgc 427
            | |||||||||||||||||||
Sbjct: 2516 taatgatatgtgctgaactgc 2536



 Score =  133 bits (67), Expect = 2e-30
 Identities = 142/167 (85%)
 Strand = Plus / Plus

                                                                        
Query: 520  cttgcttatgtaatccatcaactgacaagcgataagaatgaagttcctgtctgcacatta 579
            ||||||||||| |||||||||||| |||  ||||| ||||||||| |||||| | | || 
Sbjct: 2629 cttgcttatgttatccatcaactggcaaatgataaaaatgaagtttctgtctcctcgttg 2688

                                                                        
Query: 580  actagtgaaaactgtgaacatgatgcgccagttctttgttcttttcgtctttgtatggct 639
            | || |||||||||||||  ||| ||| || ||| |||||| || |||||||||||||||
Sbjct: 2689 aatattgaaaactgtgaatttgaggcgacaattccttgttccttgcgtctttgtatggct 2748

                                                           
Query: 640  aatgttctcttaagtgcttgccagaagctctcagactctggcaagaa 686
            |||| |||| |||||||||| |||||| |||| ||||||||||||||
Sbjct: 2749 aatgctctcataagtgcttgtcagaagatctcggactctggcaagaa 2795