Jatropha Genome Database

JcCA0281391.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0281391.10 + phase: 0 
         (693 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29692.m000545 conserved hypothetical protein                          105   3e-22

>29692.m000545 conserved hypothetical protein
          Length = 696

 Score =  105 bits (53), Expect = 3e-22
 Identities = 280/353 (79%), Gaps = 2/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 341 ccaaatatttaaagcttcaacaagtagtagacctttgcaaaacatttgatgttgtgctgc 400
           |||||||| |||||||||||  ||| |||||||  ||||||| |||||  |||  ||| |
Sbjct: 344 ccaaatatctaaagcttcaagcagtggtagaccactgcaaaagatttggggttaagctac 403

                                                                       
Query: 401 acaaagtagttgtaatgggatttcccttgagattgatggtggttgaaaaacttac-agct 459
           | || | ||| |||||||| || ||||||||| | ||||||| ||||||| || | ||| 
Sbjct: 404 aaaaggaagtggtaatggggttccccttgagacttatggtggctgaaaaaatttctagcc 463

                                                                       
Query: 460 ttccatcccacatgggtggtatttgataaacatctaaaaagaaatagagagttcttcgct 519
           ||| || ||||||||||  | ||||| |  ||||  ||||   ||||||| ||||| || 
Sbjct: 464 ttc-atgccacatgggttatctttgacaggcatcagaaaaaggatagagaattctttgca 522

                                                                       
Query: 520 cgaacaattccttgtagtatggtaatgatgaatgaaaacggagaggcagatatgattcga 579
             || |||||| ||||  |||||  ||||||||||||| ||||| ||||| |||||| ||
Sbjct: 523 aaaagaattccatgtaacatggttgtgatgaatgaaaatggagaagcagacatgattaga 582

                                                                       
Query: 580 gggcaaccgatgatcaacagcggggagttcactcctagtgaatcacccgcctcttttata 639
           ||||| ||||||||  | |  || |||||||||||  | |||||||| || ||||| || 
Sbjct: 583 gggcagccgatgattgataatggagagttcactccaggggaatcacctgcttctttgatt 642

                                                                
Query: 640 ccaactccagaattgatgatttctgatggatggaatgaaattcttaatgagta 692
           || |||||| || || ||||||||||||||| ||| |||||||||||||||||
Sbjct: 643 cccactccacaactggtgatttctgatggattgaaagaaattcttaatgagta 695



 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 120/144 (83%)
 Strand = Plus / Plus

                                                                       
Query: 116 ctccacatgtagtaatagttatggatgcacttagagagttcaccattgagccattaagat 175
           ||||||||||||| || |||||||||||||||||||||||||  || || ||| | |  |
Sbjct: 125 ctccacatgtagtcattgttatggatgcacttagagagttcagtatagaaccacttatgt 184

                                                                       
Query: 176 gggctcttgagaatattatggctgctggtggggttgtcactctccttggaatcatgcctt 235
           |||||||||| ||||||| ||||||||||     ||| ||||| || ||| ||||||| |
Sbjct: 185 gggctcttgaaaatattacggctgctggttatactgtaactcttctcggattcatgccat 244

                                   
Query: 236 ggcttaatattccattatcctcaa 259
           ||||||||||||| || |||||||
Sbjct: 245 ggcttaatattcctttgtcctcaa 268