Jatropha Genome Database

JcCA0281241.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0281241.10 - phase: 0 /partial
         (324 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29601.m000441 aprataxin, putative                                     258   2e-68

>29601.m000441 aprataxin, putative
          Length = 2250

 Score =  258 bits (130), Expect = 2e-68
 Identities = 246/287 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    ccttccatgcgacagcttcacttgcatgttattagccaggatttcaattcagacaatctt 63
            |||||||||||||||||||||||||||||||| |||||||| ||||||||| |  |||||
Sbjct: 1921 ccttccatgcgacagcttcacttgcatgttatcagccaggacttcaattcaaatcatctt 1980

                                                                        
Query: 64   aagaacaagaaacactggaactcttttactaccgcnnnnnnnagagattcagttgatgtg 123
            ||||||||||| ||||||||| ||||||  |||||       ||||||||||||||||| 
Sbjct: 1981 aagaacaagaagcactggaacacttttaacaccgccttttttagagattcagttgatgta 2040

                                                                        
Query: 124  attgaagaaattaggaatcatgggaaagcaacactaaaagatgatgacagctatttgtca 183
            || |||||| ||  ||| |||||||||||||   ||||||||||| ||||||| || |||
Sbjct: 2041 atagaagaagttcagaaccatgggaaagcaaatataaaagatgataacagctacttatca 2100

                                                                        
Query: 184  acggagttgcgctgccaccgatgtagaagtgcacaccctaacataccaaggctgaaatca 243
            | ||||||||| || |||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 2101 atggagttgcgttgtcaccgatgtagaagtgcacaccctaatatacccaggctgagatca 2160

                                                           
Query: 244  catattaagaactgccgagccccctttcctcccattctacttgaaaa 290
            |||||||  || || ||||||||||||||  || |||||||||||||
Sbjct: 2161 catattagcaattgtcgagccccctttccaacctttctacttgaaaa 2207