Jatropha Genome Database

JcCA0280911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0280911.10 - phase: 0 
         (612 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m002000 DNA-directed RNA polymerase III 25 kD polypeptide,...   214   5e-55

>29883.m002000 DNA-directed RNA polymerase III 25 kD polypeptide,
           putative
          Length = 585

 Score =  214 bits (108), Expect = 5e-55
 Identities = 210/244 (86%)
 Strand = Plus / Plus

                                                                       
Query: 136 aaggttatttctaacttgggactatgcatttcgatatatgacctcagaaacattgaaggt 195
           ||||||||| | || ||||| |||||||||||  | |||||| ||| | | ||||| |||
Sbjct: 109 aaggttattgcaaatttggggctatgcatttcagtgtatgacgtcacacatattgatggt 168

                                                                       
Query: 196 ggctttatcttcccaggagatggtgcatcaacatatacggtgaaatttagaatggttgtg 255
           |||||||| || || ||||||||||| || ||||||||||||| ||||||||| || |||
Sbjct: 169 ggctttatatttcctggagatggtgcgtctacatatacggtgagatttagaatagtcgtg 228

                                                                       
Query: 256 tttcgtccatttgtgggagaaacaattgttgcgaaacttaaagagtctaaggaagatgga 315
           |||||||||||||| ||||| | ||||||||| ||||||||||| |||||  | ||||| 
Sbjct: 229 tttcgtccatttgtaggagagataattgttgcaaaacttaaagaatctaacaatgatggt 288

                                                                       
Query: 316 ttgcgcttgtcgcttggattttttgatgatattcacataccagcccatcgtttgccaaag 375
           ||||||||||| || |||||||||||||||||  |||||||| |||||||||||||||||
Sbjct: 289 ttgcgcttgtcactcggattttttgatgatatatacataccatcccatcgtttgccaaag 348

               
Query: 376 ccat 379
           ||||
Sbjct: 349 ccat 352



 Score =  115 bits (58), Expect = 3e-25
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                       
Query: 456 gttcagtattgatggcatagacgagattaagtttaaagttgacagcgtaaagtatcctcc 515
           ||||| |||||||||| |||| ||||| ||||||   |||||||||||||||||||||||
Sbjct: 432 gttcaatattgatggcttagatgagatcaagtttcgtgttgacagcgtaaagtatcctcc 491

                                                             
Query: 516 agttcctcttgagcaacaagaaaaaccatttgcccctatgatgattacag 565
           |||||| ||||||||||||||||| || ||||| |||||| |||| ||||
Sbjct: 492 agttccacttgagcaacaagaaaagccgtttgctcctatggtgataacag 541