Jatropha Genome Database

JcCA0279321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0279321.10 - phase: 0 /partial
         (471 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29593.m000174 conserved hypothetical protein                          161   5e-39

>29593.m000174 conserved hypothetical protein
          Length = 1503

 Score =  161 bits (81), Expect = 5e-39
 Identities = 314/392 (80%), Gaps = 6/392 (1%)
 Strand = Plus / Plus

                                                                       
Query: 74  cccttcctgagaggccaagagagccggattgtccgtacttcctaaaaacaaaaagatgca 133
           |||| |||||||| ||  ||||||| || ||||| ||||||||||||||  | |||||||
Sbjct: 533 ccctccctgagagaccgggagagcctgactgtccttacttcctaaaaactcagagatgca 592

                                                                       
Query: 134 agtatggtttgaattgcaaatttaatcatccgaaagacaagttggctttgtttcaaggtg 193
           |||||||||  || ||||| ||||||||||| |||||  | |||||||||      ||| 
Sbjct: 593 agtatggttcaaaatgcaagtttaatcatccaaaagatgaattggctttg------ggta 646

                                                                       
Query: 194 gttcagaggataatgatggttttgccttaccggagaggccgtcagagcccacatgtgcat 253
           ||||| |    || |||| |||||||||||| |||||||| || ||||||| ||||||||
Sbjct: 647 gttcacaaagcaacgatgtttttgccttaccagagaggccttccgagcccatatgtgcat 706

                                                                       
Query: 254 tctatatgaagactgggaaatgcaagtttggagcaacatgcaaattccatcatccaaaag 313
           | |||   |||||||||| |||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 707 tttatgcaaagactgggagatgcaaatttggtgcaacatgcaaattccaccatccaaagg 766

                                                                       
Query: 314 atatccagatgcaatttggacaagagactaataacacagtgcagattggatcaacagtta 373
           ||||||||||   ||| |||||||||| |  ||||| | |||| |  | | || ||| ||
Sbjct: 767 atatccagatagcattaggacaagagaattgtaacataatgcaaaacgaagcagcagcta 826

                                                                       
Query: 374 ctatggaaggaacaactggagatttcaatgtggttaaggcttccatttcattgaccccag 433
             |   | ||||||||||||||| |||||| ||||||||| | ||| ||||| | || ||
Sbjct: 827 tgactcatggaacaactggagatgtcaatgcggttaaggcatgcatatcattcaaccaag 886

                                           
Query: 434 ccttaggtcataattccaaaggacttccaata 465
           |||||   ||||||||||||||||||||||||
Sbjct: 887 ccttattacataattccaaaggacttccaata 918