Jatropha Genome Database
- JcCA0279081.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0279081.10 - phase: 0
(900 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29625.m000723 conserved hypothetical protein 121 8e-27
>29625.m000723 conserved hypothetical protein
Length = 876
Score = 121 bits (61), Expect = 8e-27
Identities = 353/452 (78%), Gaps = 15/452 (3%)
Strand = Plus / Plus
Query: 133 gaaaccgatcctccggaacttccgccggattttccgcccgagtcattttggctgtctaag 192
||||| ||||| |||||| | || |||||||| ||||| |||||||| ||||| || ||
Sbjct: 139 gaaactgatccaccggaaatcccaccggatttcccgccagagtcattctggctatcaaaa 198
Query: 193 gatgctgagtacgactggttcgatcgcaacgccttcatcgagcgcaaagactccaccaaa 252
|| || ||| ||||||||||||| |||||||| || ||||| || ||||| || || |||
Sbjct: 199 gacgcagagcacgactggttcgaccgcaacgcttttatcgaacgtaaagattcaacaaaa 258
Query: 253 ggaaacaactctcactctgctaacttgaatccaaatattatcccacactctggtattcag 312
|||||| ||||| || ||||||||||||||||||| | ||| ||||
Sbjct: 259 ggaaac---tctcattcgactaacttgaatccaaatataaaccctaactc---------- 305
Query: 313 tcaaattctcaacgattttctaatctgaaatcgaaagcgtccattcttggtttgccaaag 372
|||||| || |||| ||||| |||| || ||| | || ||| | || || ||||||
Sbjct: 306 --aaattcacagagattctctaacttgaagtcaaaaccatcaattatcggcttaccaaag 363
Query: 373 cctcagaaatcttgctttgttgaagccagacgctattgtaaaccgggaaaaacacggttg 432
|| || || ||||| |||||||| || || || | |||||||| | ||| ||| | |||
Sbjct: 364 ccgcaaaagtcttgttttgttgacgcgaggcgtcactgtaaaccagcaaacacaagattg 423
Query: 433 ttcccgaaacggtccgcttcggtttctaaatcggattcgtcgttgattgagccgtcttcg 492
|| |||||||| |||| || ||| ||||||||||| || |||| || || || |||
Sbjct: 424 tttccgaaacgatccggctctgttagcaaatcggattcttctctgatcgaaccatcgtcg 483
Query: 493 cctaaagtttcttgtatgggaagagtaagatcgaagaaagatcggaatcggagactaaga 552
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 484 ccgaaagtttcttgtatgggaagagtaagatcgaagaaagatcggaatcgaagactaaag 543
Query: 553 aaccgacaacgatctggacgatcaagtgaaac 584
|| | |||| ||||||||| |||| ||||||
Sbjct: 544 aatcagcaacaatctggacggtcaaatgaaac 575
Score = 103 bits (52), Expect = 2e-21
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 1 atgccacaagtggatcttgaaaccttagtttctgcctgcgccggcgtttcctgcgaccgc 60
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 1 atgccacaagtggatcttgaaaccttagtctcagcctgcgccggcgtttcttgcgataat 60
Query: 61 aaaatcgcctgcgaaaccctagcaaccaccac 92
||||||||||||||||| ||||| |||||||
Sbjct: 61 aaaatcgcctgcgaaactctagccgccaccac 92
Score = 81.8 bits (41), Expect = 7e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 829 ccggttggtttgggtgcaatgaagcggtttgcgtctggtaggaaatcggactcgtgg 885
|||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 805 ccggttggtttgggtggaatgaagcggtttgcatctggcaggaaatcggagtcgtgg 861