Jatropha Genome Database

JcCA0279061.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0279061.10 + phase: 0 
         (678 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014313 Dehydration-responsive element-binding protein 1A,...   194   5e-49
60638.m00016 CBF-like transcription factor, putative                   52   4e-06

>30147.m014313 Dehydration-responsive element-binding protein 1A,
           putative
          Length = 711

 Score =  194 bits (98), Expect = 5e-49
 Identities = 251/302 (83%)
 Strand = Plus / Plus

                                                                       
Query: 91  aatttttccgatgaagaattgatgttagcttccagctatccaaagaaacgggctggcaga 150
           ||||| || ||||||||| | |||||||||||||| ||||| ||||| || || ||||||
Sbjct: 109 aatttctctgatgaagaagtcatgttagcttccagttatcccaagaagcgtgcaggcaga 168

                                                                       
Query: 151 aagaaattccgggagactcgccatcccgtttaccgaggagttcgtaggagaaactccggg 210
           ||||| ||  | |||||  | ||||||||||| || |||||||| ||||| || || |||
Sbjct: 169 aagaagtttagagagaccagacatcccgtttatcgtggagttcgcaggaggaattcaggg 228

                                                                       
Query: 211 aagtgggtttgtgaagttagagaacctaataagaaatcaagaatatggttaggaactttt 270
           || ||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| 
Sbjct: 229 aaatgggtctgtgaagttagagagcccaataagaaatcaagaatttggttgggcactttc 288

                                                                       
Query: 271 cccacggcggaaatggcagcacgggctcacgacgtggcggcgctggcacttagaggtagg 330
            |||| || |||||||| || || || || || |||||||| || || |||||||| |||
Sbjct: 289 gccaccgctgaaatggccgcccgtgcccatgatgtggcggcactagctcttagaggaagg 348

                                                                       
Query: 331 tctgcgtgtttgaattttgcagactcgtcatggcggttgccagtaccagcttcgagtgat 390
           ||||| |||||||||||||| ||||| || |||||| | |||||||||||||| | ||||
Sbjct: 349 tctgcttgtttgaattttgctgactcatcttggcggctcccagtaccagcttctattgat 408

             
Query: 391 cc 392
           ||
Sbjct: 409 cc 410



 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                       
Query: 521 tgttttatatggatgaggaggcagttttcggaatgccaggactgcttgcaaatatggcag 580
           |||||||||||||||||||| | ||||| |||||||| ||| ||||  || |||||||| 
Sbjct: 551 tgttttatatggatgaggagactgtttttggaatgcctggattgctaacagatatggcaa 610

                                                    
Query: 581 agggaatgttgttgcctccacctcagtgcgttgcagagaat 621
           |||  ||| | ||| |||| ||||| ||| |||||||||||
Sbjct: 611 aggccatgctattgtctccgcctcattgccttgcagagaat 651


>60638.m00016 CBF-like transcription factor, putative
          Length = 768

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 214 tgggtttgtgaagttagagaacctaataagaaatcaagaatatggttagg 263
           ||||| ||||||||||||||||| ||   |||||||||||||||| ||||
Sbjct: 175 tgggtatgtgaagttagagaaccgaacctgaaatcaagaatatggctagg 224