Jatropha Genome Database

JcCA0278721.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0278721.10 + phase: 1 /partial
         (290 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001337 undecaprenyl pyrophosphate synthetase, putative         186   5e-47

>29681.m001337 undecaprenyl pyrophosphate synthetase, putative
          Length = 933

 Score =  186 bits (94), Expect = 5e-47
 Identities = 205/242 (84%)
 Strand = Plus / Plus

                                                                       
Query: 42  gaaccagaagacattaccgaaagcctaatcgaacaagagttggaaacgaattgctctgag 101
           ||||| |||||||||| ||||  |||||||||||||||| ||||||| || |||||||||
Sbjct: 685 gaaccggaagacattagcgaagacctaatcgaacaagagctggaaacaaactgctctgag 744

                                                                       
Query: 102 tttccttcacctgatctattaatccgaacaagcggggagctcaggatcagcaactttttg 161
             ||| || ||||| |||||||||||||| || ||||| || || ||||| ||||| |||
Sbjct: 745 catccctcgcctgacctattaatccgaaccagtggggaacttagaatcagtaacttcttg 804

                                                                       
Query: 162 ctgtggcaactggcttatactgaacttttctttgcagaagaactctggcctgattttgga 221
           ||||||||  |||| || |||||||||| ||||||||||||||| |||||||||||||| 
Sbjct: 805 ctgtggcagttggcctacactgaactttactttgcagaagaactgtggcctgattttggg 864

                                                                       
Query: 222 aaagaaggattcgtggaggccttaacatcgtatcagcagaggcagagacgctacggtcaa 281
           ||||| || || || ||||||||||| || |  || || ||||||||||||||||| |||
Sbjct: 865 aaagatggttttgtagaggccttaacttcattccaacaaaggcagagacgctacggccaa 924

             
Query: 282 cg 283
           ||
Sbjct: 925 cg 926