Jatropha Genome Database

JcCA0278051.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0278051.10 - phase: 0 /pseudo/partial
         (408 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001750 pentatricopeptide repeat-containing protein, putative   159   2e-38

>29680.m001750 pentatricopeptide repeat-containing protein, putative
          Length = 1356

 Score =  159 bits (80), Expect = 2e-38
 Identities = 159/184 (86%), Gaps = 1/184 (0%)
 Strand = Plus / Plus

                                                                        
Query: 7    atgggcataagccatttcctagtttgtatgcacctataatcaacgggtatgtgtaggaca 66
            |||| |||||||| |||||| ||||||||||||| ||||| || ||| |||||||| | |
Sbjct: 1028 atggacataagccttttcctggtttgtatgcaccgataattaaaggg-atgtgtagaaga 1086

                                                                        
Query: 67   gggcaatttgatgatgctttctgtttcttcggcgaaatgaaggtcaagggtcaccctcca 126
            ||||||||||||||||| || |||||||| || ||||||||||| |||||||| ||||| 
Sbjct: 1087 gggcaatttgatgatgcattttgtttctttggtgaaatgaaggtgaagggtcatcctcct 1146

                                                                        
Query: 127  aataggccagtatatacaatgttgataactatgtgtggacgtgcaggcagatatgtggaa 186
            ||||| || || ||||| |||||||||||||||||||| |||| ||| | |||||| |||
Sbjct: 1147 aatagaccggtttataccatgttgataactatgtgtgggcgtggagggaaatatgttgaa 1206

                
Query: 187  gctg 190
            ||||
Sbjct: 1207 gctg 1210