Jatropha Genome Database

JcCA0277981.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0277981.20 + phase: 0 /partial
         (578 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014251 conserved hypothetical protein                           78   7e-14

>30170.m014251 conserved hypothetical protein
          Length = 2229

 Score = 77.8 bits (39), Expect = 7e-14
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 gatgatatggattcgctctttgaggggatggtgttgtttacgccttcccaattggttgat 69
          |||||| ||||||| || |||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 10 gatgatttggattctctgtttgagggaatggtgttgtttacgccttctcaattggatgat 69

             
Query: 70 gat 72
          |||
Sbjct: 70 gat 72



 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 223 caggagcctctcgacgagaacctattctctgacctcaccctccaaacccta 273
           ||||||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct: 217 caggagcctcttgacgagaaccttttctccgatctcaccctccaaacccta 267



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 341 ccagaaagaagaagaaagctgcaagccttagaatcggctatg 382
           ||||||||||||||| |||||| ||||| || ||||||||||
Sbjct: 326 ccagaaagaagaagagagctgctagcctcaggatcggctatg 367