Jatropha Genome Database

JcCA0275141.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0275141.10 - phase: 0 /partial
         (591 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011152 replication factor C / DNA polymerase III gamma-ta...   591   e-168

>30190.m011152 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 1002

 Score =  591 bits (298), Expect = e-168
 Identities = 457/510 (89%)
 Strand = Plus / Plus

                                                                       
Query: 42  ctacgacattccatgggtggagaagtacagacccaacaaaatcgccgacatcgttggcaa 101
           ||||||| |||||||||| ||||| || |||||   |||||||  |||||| || || ||
Sbjct: 36  ctacgacgttccatgggtagagaaatatagaccgtccaaaatctgcgacattgtcgggaa 95

                                                                       
Query: 102 cgaggatactgtctcccgccttcaagtcatcgctcgcgacggcaacatgcctaacctcat 161
           ||| ||| | ||||||||||| ||||||||||| || || ||||||||||||||||| ||
Sbjct: 96  cgaagatgccgtctcccgcctccaagtcatcgcacgggatggcaacatgcctaacctaat 155

                                                                       
Query: 162 cctatcaggtcctcctggaactggtaaaactacaagtatactggctcttgcacatgagct 221
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 156 cctatccggtcctcctggaactggtaaaactacaagtatactagctcttgcacatgagct 215

                                                                       
Query: 222 tttgggaccaaattatagggaggctgttctggagctgaatgcttcagatgacaggggtat 281
           ||| ||||| ||||||| |||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 216 tttaggacctaattataaggaggctgttctggagctaaatgcttctgatgataggggtat 275

                                                                       
Query: 282 agatgttgtgaggaacaaaatcaagatgtttgcacaaaagaaagtgacactccctcctgg 341
           |||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||
Sbjct: 276 agatgttgtgaggaacaaaatcaaaatgtttgcacaaaagaaagtgactttacctcctgg 335

                                                                       
Query: 342 acgacacaaacttgtaattctcgatgaagctgatagcatgacatctggagcgcaacaagc 401
           | |||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 336 aagacacaaagtcgtaattcttgatgaggctgatagcatgacatctggagcgcaacaagc 395

                                                                       
Query: 402 cctgaggcgcactatggaaatatattcaaattccactcgttttgcccttgcatgcaacac 461
             ||||| | || |||||||||||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 396 tttgaggaggacaatggaaatatattcaaattctacacgttttgctcttgcttgcaatac 455

                                                                       
Query: 462 ttcttctaaaatcattgagcctattcagagtagatgtgcgctggttcggttttcaagatt 521
           |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 456 ttcttctaaaattattgagcctattcagagtagatgtgcgcttgttcgattttcaagatt 515

                                         
Query: 522 atccgatcaagagatacttggtcgtctcat 551
           ||| |||||||| || ||||||||||||||
Sbjct: 516 atctgatcaagaaattcttggtcgtctcat 545