Jatropha Genome Database

JcCA0273941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0273941.10 - phase: 0 /partial
         (575 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29950.m001122 eukaryotic translation initiation factor 4e type, ...   577   e-164

>29950.m001122 eukaryotic translation initiation factor 4e type,
           putative
          Length = 669

 Score =  577 bits (291), Expect = e-164
 Identities = 433/479 (90%), Gaps = 1/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 97  gaagaacgccaagcacgcgaccttaaagctggtttgcatcctctcaagcacaagtttgta 156
           ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||
Sbjct: 91  gaagaacgccaagcacgtgagctcaaagctggcttgcatcctctcaagcacaagtttgta 150

                                                                       
Query: 157 ttttggtacactcgccgaacaccaggagttcgaacacagacatcatatgaggacaacata 216
           || |||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct: 151 ttctggtacactcgccgaacacctggagttcgaacccaaacatcatatgaggacaatata 210

                                                                       
Query: 217 aagaaaatcgtggagttcagtacagttgaaggcttttgggtctgctattgccacttggct 276
           |||||||| ||||| |||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 211 aagaaaattgtggaattcagtacggtcgaaggattttgggtctgctattgtcacttggct 270

                                                                       
Query: 277 cgaccttcttctttacccagtcccactgatctgcatcttttcaaggagggaatccgtcct 336
           ||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 271 cgatcttctgctttgcctagtcccactgatctgcatcttttcaaggagggaatccgtccc 330

                                                                       
Query: 337 ctatgggaggattctgctaattccaatggcggcaagtggataattcgctttaaaaaagtt 396
           |||||||||||||||||||| |||||||| ||||||||||||||  | || ||||| | |
Sbjct: 331 ctatgggaggattctgctaactccaatggtggcaagtggataataagattcaaaaaggct 390

                                                                       
Query: 397 gtctcaggtcgatattgggaggacctggtgcttgccttagtgggtgaccaacttgattat 456
           ||||||| ||| | |||||||||  |||||||||| ||||| || ||||||||||| || 
Sbjct: 391 gtctcagctcgcttttgggaggatttggtgcttgcattagtaggagaccaacttgagtac 450

                                                                       
Query: 457 ggtgataacatatgtggtgcagtactaagcattcgctttaatgaggatatattgagtgtt 516
           || |||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 451 ggggataacatttgtggtgcagtactaagcattcgctttaatgaggatatagtcagtgtt 510

                                                                      
Query: 517 tggaatcgtaatgcatctgatcatcaggctagtgatggcactgagagattcaatcaaaa 575
           |||||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct: 511 tggaatcgcaatgcatctgatcatcaggct-gtgatggctctaagagattcaatcaaaa 568