Jatropha Genome Database

JcCA0273631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0273631.20 - phase: 0 
         (711 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001112 LOB, putative                                           103   1e-21

>29646.m001112 LOB, putative
          Length = 777

 Score =  103 bits (52), Expect = 1e-21
 Identities = 198/244 (81%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 58  tgtgcttcatgcaagcatcaaaggaagaaatgcggagaagattgcatattagca-ccata 116
           |||||||| ||||||||||| |||||||| ||||| || |||||||| || ||| |||||
Sbjct: 52  tgtgcttcctgcaagcatcagaggaagaagtgcggtgaggattgcat-tttgcacccata 110

                                                                       
Query: 117 ttttccggcggatagaagccgggagtttcaagctgttcataaagtttttggagtaagcaa 176
           ||||||||| || |  || | ||| || ||||||||||| | ||| ||||| ||||||||
Sbjct: 111 ttttccggcagaaaagagtcaggaattccaagctgttcacagagtgtttggcgtaagcaa 170

                                                                       
Query: 177 tgtgatgaaattagtaaggagcgttagggaagaagatagaaaaactgtggcggattcttt 236
           ||| ||||||||| |||| || ||| | |  || ||| |  | |   ||||||| |||||
Sbjct: 171 tgttatgaaattaataagaagtgttggagttgaggatcggcagagactggcggagtcttt 230

                                                                       
Query: 237 ggtttgggaagctttttgcaggcagaatgatccaattttgggtcctttaggagagtatag 296
           | |||||||||||| |||||| ||||| || ||| |||| |||||||| |||||||||| 
Sbjct: 231 gatttgggaagcttcttgcagacagaaagacccagttttaggtccttttggagagtatac 290

               
Query: 297 aaaa 300
           ||||
Sbjct: 291 aaaa 294