Jatropha Genome Database

JcCA0273631.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0273631.10 - phase: 0 
         (819 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001111 glucosidase II beta subunit, putative                   289   1e-77

>29646.m001111 glucosidase II beta subunit, putative
          Length = 633

 Score =  289 bits (146), Expect = 1e-77
 Identities = 296/346 (85%)
 Strand = Plus / Plus

                                                                       
Query: 53  tcatcgccttctatttccttgtaccctcagcacactcaaaagcacctctcatcggtgtcc 112
           ||||| ||||||||||| || ||||||  || || || ||| || ||||  |||||||||
Sbjct: 53  tcatctccttctatttctttataccctttgctcattccaaatcatctcttctcggtgtcc 112

                                                                       
Query: 113 accctttagatgagaagtacttttcttcgcggcttatcaaatgcaaggacggctcgaaat 172
           ||||||||||||||||||||||| ||||  || ||||| | |||||||||||||| ||||
Sbjct: 113 accctttagatgagaagtactttgcttcaagggttatccagtgcaaggacggctcaaaat 172

                                                                       
Query: 173 cctttcccagagacagtctcaatgataatttctgcgactgtgttgacggaacagacgagc 232
           ||||  | |||||  || |||||||||||||||| || |||||||| || || || || |
Sbjct: 173 ccttcactagagattgtttcaatgataatttctgtgattgtgttgatgggacggatgaac 232

                                                                       
Query: 233 ccggaacttcagcctgtcccagaggcaaattttattgccagaatttaggaagtaaacccc 292
           ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |
Sbjct: 233 ccggaacttcagcctgtcccagaggcaaattttattgcaggaatttaggaagtaaacctc 292

                                                                       
Query: 293 agtttatattttcatcccatgtaaatgatcgaatttgtgattgctgtgacggaagtgatg 352
           ||||||| |||||||| | ||| ||||||| |||||||||||||||||| ||||||||||
Sbjct: 293 agtttattttttcatctcgtgttaatgatcaaatttgtgattgctgtgatggaagtgatg 352

                                                         
Query: 353 aatatgacagtggcatcaattgcccaaacacatgtatcatgggtgg 398
           | ||||| ||| |  |||| ||||| ||||| ||| ||||||||||
Sbjct: 353 agtatgatagtagtgtcaactgcccgaacacgtgtgtcatgggtgg 398



 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 88/105 (83%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                       
Query: 532 tccagggttgaagatggtgataattcttcaaggcgttctccttggttgcgtggtgatatt 591
           ||||| |||| ||||||| ||||| || || |  |||||||||||||||||| |||||| 
Sbjct: 526 tccagcgttgcagatggtaataatcctgcaggtggttctccttggttgcgtgctgatata 585

                                                        
Query: 592 tcaattatttcgtcgtcgtcgaaaattaaaaagaatgcattatca 636
           || |||||||||||| ||| |  || ||||||||| |||||||||
Sbjct: 586 tcgattatttcgtcggcgt-gccaaataaaaagaaggcattatca 629